Gene : Medtr7g081220 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Description:  2-dehydro-3-deoxyphosphooctonate aldolase
Genomic Order:  3644 Name:  ? Medtr7g081220
Secondary Identifier:  ? PAC:31078024
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1269 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g081220 0.5kb upstream 0.5kb upstream 7999 true chr7: 30983394-30991392 Medicago truncatula
Medtr7g081220 0.5kb upstream 0.5kb upstream 500 false chr7: 30990893-30991392 Medicago truncatula
Medtr7g081220 0.5kb downstream 0.5kb downstream 7999 true chr7: 30982894-30990892 Medicago truncatula
Medtr7g081220 0.5kb downstream 0.5kb downstream 500 false chr7: 30982894-30983393 Medicago truncatula
Medtr7g081220 1.0kb upstream 1.0kb upstream 8499 true chr7: 30983394-30991892 Medicago truncatula
Medtr7g081220 1.0kb upstream 1.0kb upstream 1000 false chr7: 30990893-30991892 Medicago truncatula
Medtr7g081220 1.0kb downstream 1.0kb downstream 8499 true chr7: 30982394-30990892 Medicago truncatula
Medtr7g081220 1.0kb downstream 1.0kb downstream 1000 false chr7: 30982394-30983393 Medicago truncatula
Medtr7g081220 2.0kb upstream 2.0kb upstream 9499 true chr7: 30983394-30992892 Medicago truncatula
Medtr7g081220 2.0kb upstream 2.0kb upstream 2000 false chr7: 30990893-30992892 Medicago truncatula
Medtr7g081220 2.0kb downstream 2.0kb downstream 9499 true chr7: 30981394-30990892 Medicago truncatula
Medtr7g081220 2.0kb downstream 2.0kb downstream 2000 false chr7: 30981394-30983393 Medicago truncatula
Medtr7g081220 5.0kb upstream 5.0kb upstream 12499 true chr7: 30983394-30995892 Medicago truncatula
Medtr7g081220 5.0kb upstream 5.0kb upstream 5000 false chr7: 30990893-30995892 Medicago truncatula
Medtr7g081220 5.0kb downstream 5.0kb downstream 12499 true chr7: 30978394-30990892 Medicago truncatula
Medtr7g081220 5.0kb downstream 5.0kb downstream 5000 false chr7: 30978394-30983393 Medicago truncatula
Medtr7g081220 10.0kb upstream 10.0kb upstream 17499 true chr7: 30983394-31000892 Medicago truncatula
Medtr7g081220 10.0kb upstream 10.0kb upstream 10000 false chr7: 30990893-31000892 Medicago truncatula
Medtr7g081220 10.0kb downstream 10.0kb downstream 17499 true chr7: 30973394-30990892 Medicago truncatula
Medtr7g081220 10.0kb downstream 10.0kb downstream 10000 false chr7: 30973394-30983393 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307124 5265 Fabidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.293        
cufflinks 0.272        
cufflinks 0.103       Low
cufflinks 0.16        
cufflinks 0.279        
cufflinks 0.178        
cufflinks 0.412       High
cufflinks 0.191        
cufflinks 0.567       High

0 Strain