Gene : Medtr7g080980 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31100:SF14 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 21-RELATED Description:  AT hook motif DNA-binding family protein
Genomic Order:  3622 Name:  ? Medtr7g080980
Secondary Identifier:  ? PAC:31081303
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g080980 0.5kb upstream 0.5kb upstream 2149 true chr7: 30873214-30875362 Medicago truncatula
Medtr7g080980 0.5kb upstream 0.5kb upstream 500 false chr7: 30874863-30875362 Medicago truncatula
Medtr7g080980 0.5kb downstream 0.5kb downstream 2149 true chr7: 30872714-30874862 Medicago truncatula
Medtr7g080980 0.5kb downstream 0.5kb downstream 500 false chr7: 30872714-30873213 Medicago truncatula
Medtr7g080980 1.0kb upstream 1.0kb upstream 2649 true chr7: 30873214-30875862 Medicago truncatula
Medtr7g080980 1.0kb upstream 1.0kb upstream 1000 false chr7: 30874863-30875862 Medicago truncatula
Medtr7g080980 1.0kb downstream 1.0kb downstream 2649 true chr7: 30872214-30874862 Medicago truncatula
Medtr7g080980 1.0kb downstream 1.0kb downstream 1000 false chr7: 30872214-30873213 Medicago truncatula
Medtr7g080980 2.0kb upstream 2.0kb upstream 3649 true chr7: 30873214-30876862 Medicago truncatula
Medtr7g080980 2.0kb upstream 2.0kb upstream 2000 false chr7: 30874863-30876862 Medicago truncatula
Medtr7g080980 2.0kb downstream 2.0kb downstream 3649 true chr7: 30871214-30874862 Medicago truncatula
Medtr7g080980 2.0kb downstream 2.0kb downstream 2000 false chr7: 30871214-30873213 Medicago truncatula
Medtr7g080980 5.0kb upstream 5.0kb upstream 6649 true chr7: 30873214-30879862 Medicago truncatula
Medtr7g080980 5.0kb upstream 5.0kb upstream 5000 false chr7: 30874863-30879862 Medicago truncatula
Medtr7g080980 5.0kb downstream 5.0kb downstream 6649 true chr7: 30868214-30874862 Medicago truncatula
Medtr7g080980 5.0kb downstream 5.0kb downstream 5000 false chr7: 30868214-30873213 Medicago truncatula
Medtr7g080980 10.0kb upstream 10.0kb upstream 11649 true chr7: 30873214-30884862 Medicago truncatula
Medtr7g080980 10.0kb upstream 10.0kb upstream 10000 false chr7: 30874863-30884862 Medicago truncatula
Medtr7g080980 10.0kb downstream 10.0kb downstream 11649 true chr7: 30863214-30874862 Medicago truncatula
Medtr7g080980 10.0kb downstream 10.0kb downstream 10000 false chr7: 30863214-30873213 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300098 5265 Fabidae View MSA
124065416 5270 Rosid View MSA
123737026 5271 Pentapetalae View MSA
122789086 5272 Eudicot View MSA
122049731 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 79.047     High  
cufflinks 0.03     Low Low
cufflinks 0.06     Low  
cufflinks 126.342     High  
cufflinks 0.025     Low Low
cufflinks 65.746     High  
cufflinks 105.712     High  
cufflinks 0.038     Low Low
cufflinks 146.635     High  

0 Strain