Gene : Medtr6g091880 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  3797 Name:  ? Medtr6g091880
Secondary Identifier:  ? PAC:31104111
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g091880 0.5kb upstream 0.5kb upstream 2056 true chr6: 34614592-34616647 Medicago truncatula
Medtr6g091880 0.5kb upstream 0.5kb upstream 500 false chr6: 34616148-34616647 Medicago truncatula
Medtr6g091880 0.5kb downstream 0.5kb downstream 2056 true chr6: 34614092-34616147 Medicago truncatula
Medtr6g091880 0.5kb downstream 0.5kb downstream 500 false chr6: 34614092-34614591 Medicago truncatula
Medtr6g091880 1.0kb upstream 1.0kb upstream 2556 true chr6: 34614592-34617147 Medicago truncatula
Medtr6g091880 1.0kb upstream 1.0kb upstream 1000 false chr6: 34616148-34617147 Medicago truncatula
Medtr6g091880 1.0kb downstream 1.0kb downstream 2556 true chr6: 34613592-34616147 Medicago truncatula
Medtr6g091880 1.0kb downstream 1.0kb downstream 1000 false chr6: 34613592-34614591 Medicago truncatula
Medtr6g091880 2.0kb upstream 2.0kb upstream 3556 true chr6: 34614592-34618147 Medicago truncatula
Medtr6g091880 2.0kb upstream 2.0kb upstream 2000 false chr6: 34616148-34618147 Medicago truncatula
Medtr6g091880 2.0kb downstream 2.0kb downstream 3556 true chr6: 34612592-34616147 Medicago truncatula
Medtr6g091880 2.0kb downstream 2.0kb downstream 2000 false chr6: 34612592-34614591 Medicago truncatula
Medtr6g091880 5.0kb upstream 5.0kb upstream 6556 true chr6: 34614592-34621147 Medicago truncatula
Medtr6g091880 5.0kb upstream 5.0kb upstream 5000 false chr6: 34616148-34621147 Medicago truncatula
Medtr6g091880 5.0kb downstream 5.0kb downstream 6556 true chr6: 34609592-34616147 Medicago truncatula
Medtr6g091880 5.0kb downstream 5.0kb downstream 5000 false chr6: 34609592-34614591 Medicago truncatula
Medtr6g091880 10.0kb upstream 10.0kb upstream 11556 true chr6: 34614592-34626147 Medicago truncatula
Medtr6g091880 10.0kb upstream 10.0kb upstream 10000 false chr6: 34616148-34626147 Medicago truncatula
Medtr6g091880 10.0kb downstream 10.0kb downstream 11556 true chr6: 34604592-34616147 Medicago truncatula
Medtr6g091880 10.0kb downstream 10.0kb downstream 10000 false chr6: 34604592-34614591 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299810 5265 Fabidae View MSA
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.809        
cufflinks 11.111     High  
cufflinks 13.404     High  
cufflinks 2.319        
cufflinks 22.782     High High
cufflinks 0.92       Low
cufflinks 2.77        
cufflinks 13.476     High  
cufflinks 4.109        

0 Strain