Gene : Medtr6g093100 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Description:  cycloartenol synthase
Genomic Order:  3862 Name:  ? Medtr6g093100
Secondary Identifier:  ? PAC:31102248
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2541 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g093100 0.5kb upstream 0.5kb upstream 9169 true chr6: 35122773-35131941 Medicago truncatula
Medtr6g093100 0.5kb upstream 0.5kb upstream 500 false chr6: 35131442-35131941 Medicago truncatula
Medtr6g093100 0.5kb downstream 0.5kb downstream 9169 true chr6: 35122273-35131441 Medicago truncatula
Medtr6g093100 0.5kb downstream 0.5kb downstream 500 false chr6: 35122273-35122772 Medicago truncatula
Medtr6g093100 1.0kb upstream 1.0kb upstream 9669 true chr6: 35122773-35132441 Medicago truncatula
Medtr6g093100 1.0kb upstream 1.0kb upstream 1000 false chr6: 35131442-35132441 Medicago truncatula
Medtr6g093100 1.0kb downstream 1.0kb downstream 9669 true chr6: 35121773-35131441 Medicago truncatula
Medtr6g093100 1.0kb downstream 1.0kb downstream 1000 false chr6: 35121773-35122772 Medicago truncatula
Medtr6g093100 2.0kb upstream 2.0kb upstream 10669 true chr6: 35122773-35133441 Medicago truncatula
Medtr6g093100 2.0kb upstream 2.0kb upstream 2000 false chr6: 35131442-35133441 Medicago truncatula
Medtr6g093100 2.0kb downstream 2.0kb downstream 10669 true chr6: 35120773-35131441 Medicago truncatula
Medtr6g093100 2.0kb downstream 2.0kb downstream 2000 false chr6: 35120773-35122772 Medicago truncatula
Medtr6g093100 5.0kb upstream 5.0kb upstream 13669 true chr6: 35122773-35136441 Medicago truncatula
Medtr6g093100 5.0kb upstream 5.0kb upstream 5000 false chr6: 35131442-35136441 Medicago truncatula
Medtr6g093100 5.0kb downstream 5.0kb downstream 13669 true chr6: 35117773-35131441 Medicago truncatula
Medtr6g093100 5.0kb downstream 5.0kb downstream 5000 false chr6: 35117773-35122772 Medicago truncatula
Medtr6g093100 10.0kb upstream 10.0kb upstream 18669 true chr6: 35122773-35141441 Medicago truncatula
Medtr6g093100 10.0kb upstream 10.0kb upstream 10000 false chr6: 35131442-35141441 Medicago truncatula
Medtr6g093100 10.0kb downstream 10.0kb downstream 18669 true chr6: 35112773-35131441 Medicago truncatula
Medtr6g093100 10.0kb downstream 10.0kb downstream 10000 false chr6: 35112773-35122772 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314535 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.001     Low  
cufflinks 0.001     Low  
cufflinks 0.004     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low High
cufflinks 0.002     Low  
cufflinks 0.108       High

0 Strain