Gene : Medtr7g031310 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.3.3.4 - Protoporphyrinogen oxidase / Protoporphyrinogenase Description:  protoporphyrinogen oxidase
Genomic Order:  1304 Name:  ? Medtr7g031310
Secondary Identifier:  ? PAC:31081273
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CHLOROPHYLL-SYN Medicago truncatula pathologic  
Mtruncatula HEME-BIOSYNTHESIS-II Medicago truncatula pathologic  
Mtruncatula PWY-5918 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g031310 0.5kb upstream 0.5kb upstream 10343 true chr7: 10884533-10894875 Medicago truncatula
Medtr7g031310 0.5kb upstream 0.5kb upstream 500 false chr7: 10894376-10894875 Medicago truncatula
Medtr7g031310 0.5kb downstream 0.5kb downstream 10343 true chr7: 10884033-10894375 Medicago truncatula
Medtr7g031310 0.5kb downstream 0.5kb downstream 500 false chr7: 10884033-10884532 Medicago truncatula
Medtr7g031310 1.0kb upstream 1.0kb upstream 10843 true chr7: 10884533-10895375 Medicago truncatula
Medtr7g031310 1.0kb upstream 1.0kb upstream 1000 false chr7: 10894376-10895375 Medicago truncatula
Medtr7g031310 1.0kb downstream 1.0kb downstream 10843 true chr7: 10883533-10894375 Medicago truncatula
Medtr7g031310 1.0kb downstream 1.0kb downstream 1000 false chr7: 10883533-10884532 Medicago truncatula
Medtr7g031310 2.0kb upstream 2.0kb upstream 11843 true chr7: 10884533-10896375 Medicago truncatula
Medtr7g031310 2.0kb upstream 2.0kb upstream 2000 false chr7: 10894376-10896375 Medicago truncatula
Medtr7g031310 2.0kb downstream 2.0kb downstream 11843 true chr7: 10882533-10894375 Medicago truncatula
Medtr7g031310 2.0kb downstream 2.0kb downstream 2000 false chr7: 10882533-10884532 Medicago truncatula
Medtr7g031310 5.0kb upstream 5.0kb upstream 14843 true chr7: 10884533-10899375 Medicago truncatula
Medtr7g031310 5.0kb upstream 5.0kb upstream 5000 false chr7: 10894376-10899375 Medicago truncatula
Medtr7g031310 5.0kb downstream 5.0kb downstream 14843 true chr7: 10879533-10894375 Medicago truncatula
Medtr7g031310 5.0kb downstream 5.0kb downstream 5000 false chr7: 10879533-10884532 Medicago truncatula
Medtr7g031310 10.0kb upstream 10.0kb upstream 19843 true chr7: 10884533-10904375 Medicago truncatula
Medtr7g031310 10.0kb upstream 10.0kb upstream 10000 false chr7: 10894376-10904375 Medicago truncatula
Medtr7g031310 10.0kb downstream 10.0kb downstream 19843 true chr7: 10874533-10894375 Medicago truncatula
Medtr7g031310 10.0kb downstream 10.0kb downstream 10000 false chr7: 10874533-10884532 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302057 5265 Fabidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.031       High
cufflinks 1.113        
cufflinks 1.287        
cufflinks 0.511       Low
cufflinks 1.319        
cufflinks 0.431       Low
cufflinks 0.908        
cufflinks 1.103        
cufflinks 1.538        

0 Strain