Gene : Medtr7g029350 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Description:  methyltransferase small domain protein
Genomic Order:  1267 Name:  ? Medtr7g029350
Secondary Identifier:  ? PAC:31077055
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g029350 0.5kb upstream 0.5kb upstream 8722 true chr7: 10401021-10409742 Medicago truncatula
Medtr7g029350 0.5kb upstream 0.5kb upstream 500 false chr7: 10409243-10409742 Medicago truncatula
Medtr7g029350 0.5kb downstream 0.5kb downstream 8722 true chr7: 10400521-10409242 Medicago truncatula
Medtr7g029350 0.5kb downstream 0.5kb downstream 500 false chr7: 10400521-10401020 Medicago truncatula
Medtr7g029350 1.0kb upstream 1.0kb upstream 9222 true chr7: 10401021-10410242 Medicago truncatula
Medtr7g029350 1.0kb upstream 1.0kb upstream 1000 false chr7: 10409243-10410242 Medicago truncatula
Medtr7g029350 1.0kb downstream 1.0kb downstream 9222 true chr7: 10400021-10409242 Medicago truncatula
Medtr7g029350 1.0kb downstream 1.0kb downstream 1000 false chr7: 10400021-10401020 Medicago truncatula
Medtr7g029350 2.0kb upstream 2.0kb upstream 10222 true chr7: 10401021-10411242 Medicago truncatula
Medtr7g029350 2.0kb upstream 2.0kb upstream 2000 false chr7: 10409243-10411242 Medicago truncatula
Medtr7g029350 2.0kb downstream 2.0kb downstream 10222 true chr7: 10399021-10409242 Medicago truncatula
Medtr7g029350 2.0kb downstream 2.0kb downstream 2000 false chr7: 10399021-10401020 Medicago truncatula
Medtr7g029350 5.0kb upstream 5.0kb upstream 13222 true chr7: 10401021-10414242 Medicago truncatula
Medtr7g029350 5.0kb upstream 5.0kb upstream 5000 false chr7: 10409243-10414242 Medicago truncatula
Medtr7g029350 5.0kb downstream 5.0kb downstream 13222 true chr7: 10396021-10409242 Medicago truncatula
Medtr7g029350 5.0kb downstream 5.0kb downstream 5000 false chr7: 10396021-10401020 Medicago truncatula
Medtr7g029350 10.0kb upstream 10.0kb upstream 18222 true chr7: 10401021-10419242 Medicago truncatula
Medtr7g029350 10.0kb upstream 10.0kb upstream 10000 false chr7: 10409243-10419242 Medicago truncatula
Medtr7g029350 10.0kb downstream 10.0kb downstream 18222 true chr7: 10391021-10409242 Medicago truncatula
Medtr7g029350 10.0kb downstream 10.0kb downstream 10000 false chr7: 10391021-10401020 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303719 5265 Fabidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.47        
cufflinks 2.044        
cufflinks 3.474       High
cufflinks 0.257        
cufflinks 3.692       High
cufflinks 0.126     Low Low
cufflinks 0.327        
cufflinks 2.731        
cufflinks 0.269        

0 Strain