Gene : Medtr7g039120 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR30128:SF8 - PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Description:  photosystem I P700 chlorophyll A apoprotein
Genomic Order:  1603 Name:  ? Medtr7g039120
Secondary Identifier:  ? PAC:31081580
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g039120 0.5kb upstream 0.5kb upstream 1213 true chr7: 14541567-14542779 Medicago truncatula
Medtr7g039120 0.5kb upstream 0.5kb upstream 500 false chr7: 14542280-14542779 Medicago truncatula
Medtr7g039120 0.5kb downstream 0.5kb downstream 1213 true chr7: 14541067-14542279 Medicago truncatula
Medtr7g039120 0.5kb downstream 0.5kb downstream 500 false chr7: 14541067-14541566 Medicago truncatula
Medtr7g039120 1.0kb upstream 1.0kb upstream 1713 true chr7: 14541567-14543279 Medicago truncatula
Medtr7g039120 1.0kb upstream 1.0kb upstream 1000 false chr7: 14542280-14543279 Medicago truncatula
Medtr7g039120 1.0kb downstream 1.0kb downstream 1713 true chr7: 14540567-14542279 Medicago truncatula
Medtr7g039120 1.0kb downstream 1.0kb downstream 1000 false chr7: 14540567-14541566 Medicago truncatula
Medtr7g039120 2.0kb upstream 2.0kb upstream 2713 true chr7: 14541567-14544279 Medicago truncatula
Medtr7g039120 2.0kb upstream 2.0kb upstream 2000 false chr7: 14542280-14544279 Medicago truncatula
Medtr7g039120 2.0kb downstream 2.0kb downstream 2713 true chr7: 14539567-14542279 Medicago truncatula
Medtr7g039120 2.0kb downstream 2.0kb downstream 2000 false chr7: 14539567-14541566 Medicago truncatula
Medtr7g039120 5.0kb upstream 5.0kb upstream 5713 true chr7: 14541567-14547279 Medicago truncatula
Medtr7g039120 5.0kb upstream 5.0kb upstream 5000 false chr7: 14542280-14547279 Medicago truncatula
Medtr7g039120 5.0kb downstream 5.0kb downstream 5713 true chr7: 14536567-14542279 Medicago truncatula
Medtr7g039120 5.0kb downstream 5.0kb downstream 5000 false chr7: 14536567-14541566 Medicago truncatula
Medtr7g039120 10.0kb upstream 10.0kb upstream 10713 true chr7: 14541567-14552279 Medicago truncatula
Medtr7g039120 10.0kb upstream 10.0kb upstream 10000 false chr7: 14542280-14552279 Medicago truncatula
Medtr7g039120 10.0kb downstream 10.0kb downstream 10713 true chr7: 14531567-14542279 Medicago truncatula
Medtr7g039120 10.0kb downstream 10.0kb downstream 10000 false chr7: 14531567-14541566 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
122267544 5265 Fabidae Singleton cluster - no MSA
124008479 5270 Rosid Singleton cluster - no MSA
123750830 5271 Pentapetalae View MSA
122773840 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain