Gene : Medtr7g007280 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Description:  neoxanthin synthase
Genomic Order:  161 Name:  ? Medtr7g007280
Secondary Identifier:  ? PAC:31079354
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6809 Medicago truncatula pathologic  
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g007280 0.5kb upstream 0.5kb upstream 3764 true chr7: 1411317-1415080 Medicago truncatula
Medtr7g007280 0.5kb upstream 0.5kb upstream 500 false chr7: 1411317-1411816 Medicago truncatula
Medtr7g007280 0.5kb downstream 0.5kb downstream 3764 true chr7: 1411817-1415580 Medicago truncatula
Medtr7g007280 0.5kb downstream 0.5kb downstream 500 false chr7: 1415081-1415580 Medicago truncatula
Medtr7g007280 1.0kb upstream 1.0kb upstream 4264 true chr7: 1410817-1415080 Medicago truncatula
Medtr7g007280 1.0kb upstream 1.0kb upstream 1000 false chr7: 1410817-1411816 Medicago truncatula
Medtr7g007280 1.0kb downstream 1.0kb downstream 4264 true chr7: 1411817-1416080 Medicago truncatula
Medtr7g007280 1.0kb downstream 1.0kb downstream 1000 false chr7: 1415081-1416080 Medicago truncatula
Medtr7g007280 2.0kb upstream 2.0kb upstream 5264 true chr7: 1409817-1415080 Medicago truncatula
Medtr7g007280 2.0kb upstream 2.0kb upstream 2000 false chr7: 1409817-1411816 Medicago truncatula
Medtr7g007280 2.0kb downstream 2.0kb downstream 5264 true chr7: 1411817-1417080 Medicago truncatula
Medtr7g007280 2.0kb downstream 2.0kb downstream 2000 false chr7: 1415081-1417080 Medicago truncatula
Medtr7g007280 5.0kb upstream 5.0kb upstream 8264 true chr7: 1406817-1415080 Medicago truncatula
Medtr7g007280 5.0kb upstream 5.0kb upstream 5000 false chr7: 1406817-1411816 Medicago truncatula
Medtr7g007280 5.0kb downstream 5.0kb downstream 8264 true chr7: 1411817-1420080 Medicago truncatula
Medtr7g007280 5.0kb downstream 5.0kb downstream 5000 false chr7: 1415081-1420080 Medicago truncatula
Medtr7g007280 10.0kb upstream 10.0kb upstream 13264 true chr7: 1401817-1415080 Medicago truncatula
Medtr7g007280 10.0kb upstream 10.0kb upstream 10000 false chr7: 1401817-1411816 Medicago truncatula
Medtr7g007280 10.0kb downstream 10.0kb downstream 13264 true chr7: 1411817-1425080 Medicago truncatula
Medtr7g007280 10.0kb downstream 10.0kb downstream 10000 false chr7: 1415081-1425080 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.091       Low
cufflinks 0.539        
cufflinks 0.543        
cufflinks 0.224        
cufflinks 1.2       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.396        
cufflinks 0.401        
cufflinks 0.328        

0 Strain