Gene : Medtr7g005390 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF16746 - BAR domain of APPL family (BAR_3) Description:  hydroxyproline-rich glycoprotein family protein
Genomic Order:  6 Name:  ? Medtr7g005390
Secondary Identifier:  ? PAC:31078972
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g005390 0.5kb upstream 0.5kb upstream 7540 true chr7: 95110-102649 Medicago truncatula
Medtr7g005390 0.5kb upstream 0.5kb upstream 500 false chr7: 95110-95609 Medicago truncatula
Medtr7g005390 0.5kb downstream 0.5kb downstream 7540 true chr7: 95610-103149 Medicago truncatula
Medtr7g005390 0.5kb downstream 0.5kb downstream 500 false chr7: 102650-103149 Medicago truncatula
Medtr7g005390 1.0kb upstream 1.0kb upstream 8040 true chr7: 94610-102649 Medicago truncatula
Medtr7g005390 1.0kb upstream 1.0kb upstream 1000 false chr7: 94610-95609 Medicago truncatula
Medtr7g005390 1.0kb downstream 1.0kb downstream 8040 true chr7: 95610-103649 Medicago truncatula
Medtr7g005390 1.0kb downstream 1.0kb downstream 1000 false chr7: 102650-103649 Medicago truncatula
Medtr7g005390 2.0kb upstream 2.0kb upstream 9040 true chr7: 93610-102649 Medicago truncatula
Medtr7g005390 2.0kb upstream 2.0kb upstream 2000 false chr7: 93610-95609 Medicago truncatula
Medtr7g005390 2.0kb downstream 2.0kb downstream 9040 true chr7: 95610-104649 Medicago truncatula
Medtr7g005390 2.0kb downstream 2.0kb downstream 2000 false chr7: 102650-104649 Medicago truncatula
Medtr7g005390 5.0kb upstream 5.0kb upstream 12040 true chr7: 90610-102649 Medicago truncatula
Medtr7g005390 5.0kb upstream 5.0kb upstream 5000 false chr7: 90610-95609 Medicago truncatula
Medtr7g005390 5.0kb downstream 5.0kb downstream 12040 true chr7: 95610-107649 Medicago truncatula
Medtr7g005390 5.0kb downstream 5.0kb downstream 5000 false chr7: 102650-107649 Medicago truncatula
Medtr7g005390 10.0kb upstream 10.0kb upstream 17040 true chr7: 85610-102649 Medicago truncatula
Medtr7g005390 10.0kb upstream 10.0kb upstream 10000 false chr7: 85610-95609 Medicago truncatula
Medtr7g005390 10.0kb downstream 10.0kb downstream 17040 true chr7: 95610-112649 Medicago truncatula
Medtr7g005390 10.0kb downstream 10.0kb downstream 10000 false chr7: 102650-112649 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302700 5265 Fabidae View MSA
124070616 5270 Rosid View MSA
123745722 5271 Pentapetalae View MSA
122786878 5272 Eudicot View MSA
122041909 5273 Angiosperm View MSA
121348701 5274 Embryophyte View MSA
123380980 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.98       High
cufflinks 1.595        
cufflinks 2.115        
cufflinks 2.788        
cufflinks 1.657        
cufflinks 1.938        
cufflinks 5.052       High
cufflinks 1.794        
cufflinks 2.059        

0 Strain