Gene : Medtr7g100345 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Description:  diaminopimelate epimerase
Genomic Order:  4941 Name:  ? Medtr7g100345
Secondary Identifier:  ? PAC:31079591
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5097 Medicago truncatula pathologic  
Mtruncatula PWY-724 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g100345 0.5kb upstream 0.5kb upstream 6761 true chr7: 40246864-40253624 Medicago truncatula
Medtr7g100345 0.5kb upstream 0.5kb upstream 500 false chr7: 40253125-40253624 Medicago truncatula
Medtr7g100345 0.5kb downstream 0.5kb downstream 6761 true chr7: 40246364-40253124 Medicago truncatula
Medtr7g100345 0.5kb downstream 0.5kb downstream 500 false chr7: 40246364-40246863 Medicago truncatula
Medtr7g100345 1.0kb upstream 1.0kb upstream 7261 true chr7: 40246864-40254124 Medicago truncatula
Medtr7g100345 1.0kb upstream 1.0kb upstream 1000 false chr7: 40253125-40254124 Medicago truncatula
Medtr7g100345 1.0kb downstream 1.0kb downstream 7261 true chr7: 40245864-40253124 Medicago truncatula
Medtr7g100345 1.0kb downstream 1.0kb downstream 1000 false chr7: 40245864-40246863 Medicago truncatula
Medtr7g100345 2.0kb upstream 2.0kb upstream 8261 true chr7: 40246864-40255124 Medicago truncatula
Medtr7g100345 2.0kb upstream 2.0kb upstream 2000 false chr7: 40253125-40255124 Medicago truncatula
Medtr7g100345 2.0kb downstream 2.0kb downstream 8261 true chr7: 40244864-40253124 Medicago truncatula
Medtr7g100345 2.0kb downstream 2.0kb downstream 2000 false chr7: 40244864-40246863 Medicago truncatula
Medtr7g100345 5.0kb upstream 5.0kb upstream 11261 true chr7: 40246864-40258124 Medicago truncatula
Medtr7g100345 5.0kb upstream 5.0kb upstream 5000 false chr7: 40253125-40258124 Medicago truncatula
Medtr7g100345 5.0kb downstream 5.0kb downstream 11261 true chr7: 40241864-40253124 Medicago truncatula
Medtr7g100345 5.0kb downstream 5.0kb downstream 5000 false chr7: 40241864-40246863 Medicago truncatula
Medtr7g100345 10.0kb upstream 10.0kb upstream 16261 true chr7: 40246864-40263124 Medicago truncatula
Medtr7g100345 10.0kb upstream 10.0kb upstream 10000 false chr7: 40253125-40263124 Medicago truncatula
Medtr7g100345 10.0kb downstream 10.0kb downstream 16261 true chr7: 40236864-40253124 Medicago truncatula
Medtr7g100345 10.0kb downstream 10.0kb downstream 10000 false chr7: 40236864-40246863 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306016 5265 Fabidae View MSA
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.034       Low
cufflinks 6.723        
cufflinks 6.296        
cufflinks 4.482        
cufflinks 6.514        
cufflinks 2.097       Low
cufflinks 3.462        
cufflinks 6.282        
cufflinks 5.516        

0 Strain