Gene : Medtr7g101940 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11476:SF5 - CLASS II AARS AND BIOTIN SYNTHETASES SUPERFAMILY PROTEIN-RELATED Description:  histidyl-tRNA synthetase
Genomic Order:  5067 Name:  ? Medtr7g101940
Secondary Identifier:  ? PAC:31079637
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g101940 0.5kb upstream 0.5kb upstream 9591 true chr7: 41152675-41162265 Medicago truncatula
Medtr7g101940 0.5kb upstream 0.5kb upstream 500 false chr7: 41152675-41153174 Medicago truncatula
Medtr7g101940 0.5kb downstream 0.5kb downstream 9591 true chr7: 41153175-41162765 Medicago truncatula
Medtr7g101940 0.5kb downstream 0.5kb downstream 500 false chr7: 41162266-41162765 Medicago truncatula
Medtr7g101940 1.0kb upstream 1.0kb upstream 10091 true chr7: 41152175-41162265 Medicago truncatula
Medtr7g101940 1.0kb upstream 1.0kb upstream 1000 false chr7: 41152175-41153174 Medicago truncatula
Medtr7g101940 1.0kb downstream 1.0kb downstream 10091 true chr7: 41153175-41163265 Medicago truncatula
Medtr7g101940 1.0kb downstream 1.0kb downstream 1000 false chr7: 41162266-41163265 Medicago truncatula
Medtr7g101940 2.0kb upstream 2.0kb upstream 11091 true chr7: 41151175-41162265 Medicago truncatula
Medtr7g101940 2.0kb upstream 2.0kb upstream 2000 false chr7: 41151175-41153174 Medicago truncatula
Medtr7g101940 2.0kb downstream 2.0kb downstream 11091 true chr7: 41153175-41164265 Medicago truncatula
Medtr7g101940 2.0kb downstream 2.0kb downstream 2000 false chr7: 41162266-41164265 Medicago truncatula
Medtr7g101940 5.0kb upstream 5.0kb upstream 14091 true chr7: 41148175-41162265 Medicago truncatula
Medtr7g101940 5.0kb upstream 5.0kb upstream 5000 false chr7: 41148175-41153174 Medicago truncatula
Medtr7g101940 5.0kb downstream 5.0kb downstream 14091 true chr7: 41153175-41167265 Medicago truncatula
Medtr7g101940 5.0kb downstream 5.0kb downstream 5000 false chr7: 41162266-41167265 Medicago truncatula
Medtr7g101940 10.0kb upstream 10.0kb upstream 19091 true chr7: 41143175-41162265 Medicago truncatula
Medtr7g101940 10.0kb upstream 10.0kb upstream 10000 false chr7: 41143175-41153174 Medicago truncatula
Medtr7g101940 10.0kb downstream 10.0kb downstream 19091 true chr7: 41153175-41172265 Medicago truncatula
Medtr7g101940 10.0kb downstream 10.0kb downstream 10000 false chr7: 41162266-41172265 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303322 5265 Fabidae View MSA
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.679        
cufflinks 3.198       High
cufflinks 2.447        
cufflinks 0.648        
cufflinks 3.108       High
cufflinks 0.342       Low
cufflinks 1.122        
cufflinks 2.897        
cufflinks 1.232        

0 Strain