Gene : Medtr7g068580 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Description:  ubiquitin-protein ligase, putative
Genomic Order:  2801 Name:  ? Medtr7g068580
Secondary Identifier:  ? PAC:31083894
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g068580 0.5kb upstream 0.5kb upstream 6901 true chr7: 25128711-25135611 Medicago truncatula
Medtr7g068580 0.5kb upstream 0.5kb upstream 500 false chr7: 25128711-25129210 Medicago truncatula
Medtr7g068580 0.5kb downstream 0.5kb downstream 6901 true chr7: 25129211-25136111 Medicago truncatula
Medtr7g068580 0.5kb downstream 0.5kb downstream 500 false chr7: 25135612-25136111 Medicago truncatula
Medtr7g068580 1.0kb upstream 1.0kb upstream 7401 true chr7: 25128211-25135611 Medicago truncatula
Medtr7g068580 1.0kb upstream 1.0kb upstream 1000 false chr7: 25128211-25129210 Medicago truncatula
Medtr7g068580 1.0kb downstream 1.0kb downstream 7401 true chr7: 25129211-25136611 Medicago truncatula
Medtr7g068580 1.0kb downstream 1.0kb downstream 1000 false chr7: 25135612-25136611 Medicago truncatula
Medtr7g068580 2.0kb upstream 2.0kb upstream 8401 true chr7: 25127211-25135611 Medicago truncatula
Medtr7g068580 2.0kb upstream 2.0kb upstream 2000 false chr7: 25127211-25129210 Medicago truncatula
Medtr7g068580 2.0kb downstream 2.0kb downstream 8401 true chr7: 25129211-25137611 Medicago truncatula
Medtr7g068580 2.0kb downstream 2.0kb downstream 2000 false chr7: 25135612-25137611 Medicago truncatula
Medtr7g068580 5.0kb upstream 5.0kb upstream 11401 true chr7: 25124211-25135611 Medicago truncatula
Medtr7g068580 5.0kb upstream 5.0kb upstream 5000 false chr7: 25124211-25129210 Medicago truncatula
Medtr7g068580 5.0kb downstream 5.0kb downstream 11401 true chr7: 25129211-25140611 Medicago truncatula
Medtr7g068580 5.0kb downstream 5.0kb downstream 5000 false chr7: 25135612-25140611 Medicago truncatula
Medtr7g068580 10.0kb upstream 10.0kb upstream 16401 true chr7: 25119211-25135611 Medicago truncatula
Medtr7g068580 10.0kb upstream 10.0kb upstream 10000 false chr7: 25119211-25129210 Medicago truncatula
Medtr7g068580 10.0kb downstream 10.0kb downstream 16401 true chr7: 25129211-25145611 Medicago truncatula
Medtr7g068580 10.0kb downstream 10.0kb downstream 10000 false chr7: 25135612-25145611 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122299280 5265 Fabidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low  
cufflinks 0.046     Low High
cufflinks 0.019     Low  
cufflinks 0.008     Low  
cufflinks 0.075       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.025     Low  
cufflinks 0.009     Low  

0 Strain