Gene : Medtr7g072580 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR10126 - TATA-BOX BINDING PROTEIN Description:  transcription factor TFIID protein
Genomic Order:  3038 Name:  ? Medtr7g072580
Secondary Identifier:  ? PAC:31084348
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g072580 0.5kb upstream 0.5kb upstream 5224 true chr7: 27010811-27016034 Medicago truncatula
Medtr7g072580 0.5kb upstream 0.5kb upstream 500 false chr7: 27010811-27011310 Medicago truncatula
Medtr7g072580 0.5kb downstream 0.5kb downstream 5224 true chr7: 27011311-27016534 Medicago truncatula
Medtr7g072580 0.5kb downstream 0.5kb downstream 500 false chr7: 27016035-27016534 Medicago truncatula
Medtr7g072580 1.0kb upstream 1.0kb upstream 5724 true chr7: 27010311-27016034 Medicago truncatula
Medtr7g072580 1.0kb upstream 1.0kb upstream 1000 false chr7: 27010311-27011310 Medicago truncatula
Medtr7g072580 1.0kb downstream 1.0kb downstream 5724 true chr7: 27011311-27017034 Medicago truncatula
Medtr7g072580 1.0kb downstream 1.0kb downstream 1000 false chr7: 27016035-27017034 Medicago truncatula
Medtr7g072580 2.0kb upstream 2.0kb upstream 6724 true chr7: 27009311-27016034 Medicago truncatula
Medtr7g072580 2.0kb upstream 2.0kb upstream 2000 false chr7: 27009311-27011310 Medicago truncatula
Medtr7g072580 2.0kb downstream 2.0kb downstream 6724 true chr7: 27011311-27018034 Medicago truncatula
Medtr7g072580 2.0kb downstream 2.0kb downstream 2000 false chr7: 27016035-27018034 Medicago truncatula
Medtr7g072580 5.0kb upstream 5.0kb upstream 9724 true chr7: 27006311-27016034 Medicago truncatula
Medtr7g072580 5.0kb upstream 5.0kb upstream 5000 false chr7: 27006311-27011310 Medicago truncatula
Medtr7g072580 5.0kb downstream 5.0kb downstream 9724 true chr7: 27011311-27021034 Medicago truncatula
Medtr7g072580 5.0kb downstream 5.0kb downstream 5000 false chr7: 27016035-27021034 Medicago truncatula
Medtr7g072580 10.0kb upstream 10.0kb upstream 14724 true chr7: 27001311-27016034 Medicago truncatula
Medtr7g072580 10.0kb upstream 10.0kb upstream 10000 false chr7: 27001311-27011310 Medicago truncatula
Medtr7g072580 10.0kb downstream 10.0kb downstream 14724 true chr7: 27011311-27026034 Medicago truncatula
Medtr7g072580 10.0kb downstream 10.0kb downstream 10000 false chr7: 27016035-27026034 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300671 5265 Fabidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.455       High
cufflinks 1.737        
cufflinks 2.067        
cufflinks 1.461        
cufflinks 2.151        
cufflinks 1.157       Low
cufflinks 2.272        
cufflinks 1.838        
cufflinks 1.336        

0 Strain