Gene : Medtr7g053260 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23315:SF75 - U-BOX DOMAIN-CONTAINING PROTEIN 9 Description:  plant U-box protein
Genomic Order:  1973 Name:  ? Medtr7g053260
Secondary Identifier:  ? PAC:31080454
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g053260 0.5kb upstream 0.5kb upstream 3596 true chr7: 18725963-18729558 Medicago truncatula
Medtr7g053260 0.5kb upstream 0.5kb upstream 500 false chr7: 18729059-18729558 Medicago truncatula
Medtr7g053260 0.5kb downstream 0.5kb downstream 3596 true chr7: 18725463-18729058 Medicago truncatula
Medtr7g053260 0.5kb downstream 0.5kb downstream 500 false chr7: 18725463-18725962 Medicago truncatula
Medtr7g053260 1.0kb upstream 1.0kb upstream 4096 true chr7: 18725963-18730058 Medicago truncatula
Medtr7g053260 1.0kb upstream 1.0kb upstream 1000 false chr7: 18729059-18730058 Medicago truncatula
Medtr7g053260 1.0kb downstream 1.0kb downstream 4096 true chr7: 18724963-18729058 Medicago truncatula
Medtr7g053260 1.0kb downstream 1.0kb downstream 1000 false chr7: 18724963-18725962 Medicago truncatula
Medtr7g053260 2.0kb upstream 2.0kb upstream 5096 true chr7: 18725963-18731058 Medicago truncatula
Medtr7g053260 2.0kb upstream 2.0kb upstream 2000 false chr7: 18729059-18731058 Medicago truncatula
Medtr7g053260 2.0kb downstream 2.0kb downstream 5096 true chr7: 18723963-18729058 Medicago truncatula
Medtr7g053260 2.0kb downstream 2.0kb downstream 2000 false chr7: 18723963-18725962 Medicago truncatula
Medtr7g053260 5.0kb upstream 5.0kb upstream 8096 true chr7: 18725963-18734058 Medicago truncatula
Medtr7g053260 5.0kb upstream 5.0kb upstream 5000 false chr7: 18729059-18734058 Medicago truncatula
Medtr7g053260 5.0kb downstream 5.0kb downstream 8096 true chr7: 18720963-18729058 Medicago truncatula
Medtr7g053260 5.0kb downstream 5.0kb downstream 5000 false chr7: 18720963-18725962 Medicago truncatula
Medtr7g053260 10.0kb upstream 10.0kb upstream 13096 true chr7: 18725963-18739058 Medicago truncatula
Medtr7g053260 10.0kb upstream 10.0kb upstream 10000 false chr7: 18729059-18739058 Medicago truncatula
Medtr7g053260 10.0kb downstream 10.0kb downstream 13096 true chr7: 18715963-18729058 Medicago truncatula
Medtr7g053260 10.0kb downstream 10.0kb downstream 10000 false chr7: 18715963-18725962 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029179 5273 Angiosperm View MSA
122312379 5265 Fabidae View MSA
124071680 5270 Rosid View MSA
123745896 5271 Pentapetalae View MSA
122785914 5272 Eudicot View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.558     High High
cufflinks 3.744        
cufflinks 4.172        
cufflinks 1.095        
cufflinks 9.155        
cufflinks 0.506       Low
cufflinks 1.752        
cufflinks 4.198        
cufflinks 1.64        

0 Strain