Gene : Medtr7g451440 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23084:SF156 - RADIAL SPOKE HEAD 10 HOMOLOG B2 Description:  ICE-like protease p20 domain protein
Genomic Order:  1836 Name:  ? Medtr7g451440
Secondary Identifier:  ? PAC:31078492
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6351 Medicago truncatula pathologic  
Mtruncatula PWY-6352 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g451440 0.5kb upstream 0.5kb upstream 5354 true chr7: 17299916-17305269 Medicago truncatula
Medtr7g451440 0.5kb upstream 0.5kb upstream 500 false chr7: 17304770-17305269 Medicago truncatula
Medtr7g451440 0.5kb downstream 0.5kb downstream 5354 true chr7: 17299416-17304769 Medicago truncatula
Medtr7g451440 0.5kb downstream 0.5kb downstream 500 false chr7: 17299416-17299915 Medicago truncatula
Medtr7g451440 1.0kb upstream 1.0kb upstream 5854 true chr7: 17299916-17305769 Medicago truncatula
Medtr7g451440 1.0kb upstream 1.0kb upstream 1000 false chr7: 17304770-17305769 Medicago truncatula
Medtr7g451440 1.0kb downstream 1.0kb downstream 5854 true chr7: 17298916-17304769 Medicago truncatula
Medtr7g451440 1.0kb downstream 1.0kb downstream 1000 false chr7: 17298916-17299915 Medicago truncatula
Medtr7g451440 2.0kb upstream 2.0kb upstream 6854 true chr7: 17299916-17306769 Medicago truncatula
Medtr7g451440 2.0kb upstream 2.0kb upstream 2000 false chr7: 17304770-17306769 Medicago truncatula
Medtr7g451440 2.0kb downstream 2.0kb downstream 6854 true chr7: 17297916-17304769 Medicago truncatula
Medtr7g451440 2.0kb downstream 2.0kb downstream 2000 false chr7: 17297916-17299915 Medicago truncatula
Medtr7g451440 5.0kb upstream 5.0kb upstream 9854 true chr7: 17299916-17309769 Medicago truncatula
Medtr7g451440 5.0kb upstream 5.0kb upstream 5000 false chr7: 17304770-17309769 Medicago truncatula
Medtr7g451440 5.0kb downstream 5.0kb downstream 9854 true chr7: 17294916-17304769 Medicago truncatula
Medtr7g451440 5.0kb downstream 5.0kb downstream 5000 false chr7: 17294916-17299915 Medicago truncatula
Medtr7g451440 10.0kb upstream 10.0kb upstream 14854 true chr7: 17299916-17314769 Medicago truncatula
Medtr7g451440 10.0kb upstream 10.0kb upstream 10000 false chr7: 17304770-17314769 Medicago truncatula
Medtr7g451440 10.0kb downstream 10.0kb downstream 14854 true chr7: 17289916-17304769 Medicago truncatula
Medtr7g451440 10.0kb downstream 10.0kb downstream 10000 false chr7: 17289916-17299915 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314429 5265 Fabidae View MSA
124068935 5270 Rosid View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.596       High
cufflinks 2.405        
cufflinks 3.42        
cufflinks 3.053        
cufflinks 3.143        
cufflinks 2.164        
cufflinks 2.851        
cufflinks 2.63        
cufflinks 2.657        

0 Strain