Gene : Medtr8g007295 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Description:  lysyl-tRNA synthetase (class II)
Genomic Order:  176 Name:  ? Medtr8g007295
Secondary Identifier:  ? PAC:31073861
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g007295 0.5kb upstream 0.5kb upstream 9739   true chr8: 1432139-1441877 Medicago truncatula
Medtr8g007295 0.5kb upstream 0.5kb upstream 500   false chr8: 1432139-1432638 Medicago truncatula
Medtr8g007295 0.5kb downstream 0.5kb downstream 9739   true chr8: 1432639-1442377 Medicago truncatula
Medtr8g007295 0.5kb downstream 0.5kb downstream 500   false chr8: 1441878-1442377 Medicago truncatula
Medtr8g007295 1.0kb upstream 1.0kb upstream 10239   true chr8: 1431639-1441877 Medicago truncatula
Medtr8g007295 1.0kb upstream 1.0kb upstream 1000   false chr8: 1431639-1432638 Medicago truncatula
Medtr8g007295 1.0kb downstream 1.0kb downstream 10239   true chr8: 1432639-1442877 Medicago truncatula
Medtr8g007295 1.0kb downstream 1.0kb downstream 1000   false chr8: 1441878-1442877 Medicago truncatula
Medtr8g007295 2.0kb upstream 2.0kb upstream 11239   true chr8: 1430639-1441877 Medicago truncatula
Medtr8g007295 2.0kb upstream 2.0kb upstream 2000   false chr8: 1430639-1432638 Medicago truncatula
Medtr8g007295 2.0kb downstream 2.0kb downstream 11239   true chr8: 1432639-1443877 Medicago truncatula
Medtr8g007295 2.0kb downstream 2.0kb downstream 2000   false chr8: 1441878-1443877 Medicago truncatula
Medtr8g007295 5.0kb upstream 5.0kb upstream 14239   true chr8: 1427639-1441877 Medicago truncatula
Medtr8g007295 5.0kb upstream 5.0kb upstream 5000   false chr8: 1427639-1432638 Medicago truncatula
Medtr8g007295 5.0kb downstream 5.0kb downstream 14239   true chr8: 1432639-1446877 Medicago truncatula
Medtr8g007295 5.0kb downstream 5.0kb downstream 5000   false chr8: 1441878-1446877 Medicago truncatula
Medtr8g007295 10.0kb upstream 10.0kb upstream 19239   true chr8: 1422639-1441877 Medicago truncatula
Medtr8g007295 10.0kb upstream 10.0kb upstream 10000   false chr8: 1422639-1432638 Medicago truncatula
Medtr8g007295 10.0kb downstream 10.0kb downstream 19239   true chr8: 1432639-1451877 Medicago truncatula
Medtr8g007295 10.0kb downstream 10.0kb downstream 10000   false chr8: 1441878-1451877 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305134 5265 Fabidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.342        
cufflinks 1.945        
cufflinks 1.903        
cufflinks 0.166       Low
cufflinks 3.04       High
cufflinks 0.168       Low
cufflinks 0.39        
cufflinks 2.24       High
cufflinks 0.26        

0 Strain