Gene : Medtr7g113680 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10252//PTHR10252:SF49 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Description:  nuclear transcription factor Y protein
Genomic Order:  5863 Name:  ? Medtr7g113680
Secondary Identifier:  ? PAC:31082816
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g113680 0.5kb upstream 0.5kb upstream 3347 true chr7: 46850661-46854007 Medicago truncatula
Medtr7g113680 0.5kb upstream 0.5kb upstream 500 false chr7: 46853508-46854007 Medicago truncatula
Medtr7g113680 0.5kb downstream 0.5kb downstream 3347 true chr7: 46850161-46853507 Medicago truncatula
Medtr7g113680 0.5kb downstream 0.5kb downstream 500 false chr7: 46850161-46850660 Medicago truncatula
Medtr7g113680 1.0kb upstream 1.0kb upstream 3847 true chr7: 46850661-46854507 Medicago truncatula
Medtr7g113680 1.0kb upstream 1.0kb upstream 1000 false chr7: 46853508-46854507 Medicago truncatula
Medtr7g113680 1.0kb downstream 1.0kb downstream 3847 true chr7: 46849661-46853507 Medicago truncatula
Medtr7g113680 1.0kb downstream 1.0kb downstream 1000 false chr7: 46849661-46850660 Medicago truncatula
Medtr7g113680 2.0kb upstream 2.0kb upstream 4847 true chr7: 46850661-46855507 Medicago truncatula
Medtr7g113680 2.0kb upstream 2.0kb upstream 2000 false chr7: 46853508-46855507 Medicago truncatula
Medtr7g113680 2.0kb downstream 2.0kb downstream 4847 true chr7: 46848661-46853507 Medicago truncatula
Medtr7g113680 2.0kb downstream 2.0kb downstream 2000 false chr7: 46848661-46850660 Medicago truncatula
Medtr7g113680 5.0kb upstream 5.0kb upstream 7847 true chr7: 46850661-46858507 Medicago truncatula
Medtr7g113680 5.0kb upstream 5.0kb upstream 5000 false chr7: 46853508-46858507 Medicago truncatula
Medtr7g113680 5.0kb downstream 5.0kb downstream 7847 true chr7: 46845661-46853507 Medicago truncatula
Medtr7g113680 5.0kb downstream 5.0kb downstream 5000 false chr7: 46845661-46850660 Medicago truncatula
Medtr7g113680 10.0kb upstream 10.0kb upstream 12847 true chr7: 46850661-46863507 Medicago truncatula
Medtr7g113680 10.0kb upstream 10.0kb upstream 10000 false chr7: 46853508-46863507 Medicago truncatula
Medtr7g113680 10.0kb downstream 10.0kb downstream 12847 true chr7: 46840661-46853507 Medicago truncatula
Medtr7g113680 10.0kb downstream 10.0kb downstream 10000 false chr7: 46840661-46850660 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303223 5265 Fabidae View MSA
124071144 5270 Rosid View MSA
123743416 5271 Pentapetalae View MSA
122794744 5272 Eudicot View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.227     High  
cufflinks 6.804        
cufflinks 6.381        
cufflinks 30.614     High High
cufflinks 8.948        
cufflinks 25.894     High High
cufflinks 7.878        
cufflinks 5.93       Low
cufflinks 19.351     High  

0 Strain