Gene : Medtr7g113540 M. truncatula Mt4.0v1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  5853 Name:  ? Medtr7g113540
Secondary Identifier:  ? PAC:31084302
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g113540 0.5kb upstream 0.5kb upstream 3203 true chr7: 46787166-46790368 Medicago truncatula
Medtr7g113540 0.5kb upstream 0.5kb upstream 500 false chr7: 46789869-46790368 Medicago truncatula
Medtr7g113540 0.5kb downstream 0.5kb downstream 3203 true chr7: 46786666-46789868 Medicago truncatula
Medtr7g113540 0.5kb downstream 0.5kb downstream 500 false chr7: 46786666-46787165 Medicago truncatula
Medtr7g113540 1.0kb upstream 1.0kb upstream 3703 true chr7: 46787166-46790868 Medicago truncatula
Medtr7g113540 1.0kb upstream 1.0kb upstream 1000 false chr7: 46789869-46790868 Medicago truncatula
Medtr7g113540 1.0kb downstream 1.0kb downstream 3703 true chr7: 46786166-46789868 Medicago truncatula
Medtr7g113540 1.0kb downstream 1.0kb downstream 1000 false chr7: 46786166-46787165 Medicago truncatula
Medtr7g113540 2.0kb upstream 2.0kb upstream 4703 true chr7: 46787166-46791868 Medicago truncatula
Medtr7g113540 2.0kb upstream 2.0kb upstream 2000 false chr7: 46789869-46791868 Medicago truncatula
Medtr7g113540 2.0kb downstream 2.0kb downstream 4703 true chr7: 46785166-46789868 Medicago truncatula
Medtr7g113540 2.0kb downstream 2.0kb downstream 2000 false chr7: 46785166-46787165 Medicago truncatula
Medtr7g113540 5.0kb upstream 5.0kb upstream 7703 true chr7: 46787166-46794868 Medicago truncatula
Medtr7g113540 5.0kb upstream 5.0kb upstream 5000 false chr7: 46789869-46794868 Medicago truncatula
Medtr7g113540 5.0kb downstream 5.0kb downstream 7703 true chr7: 46782166-46789868 Medicago truncatula
Medtr7g113540 5.0kb downstream 5.0kb downstream 5000 false chr7: 46782166-46787165 Medicago truncatula
Medtr7g113540 10.0kb upstream 10.0kb upstream 12703 true chr7: 46787166-46799868 Medicago truncatula
Medtr7g113540 10.0kb upstream 10.0kb upstream 10000 false chr7: 46789869-46799868 Medicago truncatula
Medtr7g113540 10.0kb downstream 10.0kb downstream 12703 true chr7: 46777166-46789868 Medicago truncatula
Medtr7g113540 10.0kb downstream 10.0kb downstream 10000 false chr7: 46777166-46787165 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310588 5265 Fabidae View MSA
124066488 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.373        
cufflinks 0.25        
cufflinks 0.299        
cufflinks 0.089       Low
cufflinks 0.738       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.392        
cufflinks 0.341        
cufflinks 0.347        

0 Strain