Gene : Medtr7g114190 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Description:  dehydroquinate dehydratase/shikimate dehydrogenase
Genomic Order:  5902 Name:  ? Medtr7g114190
Secondary Identifier:  ? PAC:31082387
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ARO-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6163 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g114190 0.5kb upstream 0.5kb upstream 4630 true chr7: 47100238-47104867 Medicago truncatula
Medtr7g114190 0.5kb upstream 0.5kb upstream 500 false chr7: 47104368-47104867 Medicago truncatula
Medtr7g114190 0.5kb downstream 0.5kb downstream 4630 true chr7: 47099738-47104367 Medicago truncatula
Medtr7g114190 0.5kb downstream 0.5kb downstream 500 false chr7: 47099738-47100237 Medicago truncatula
Medtr7g114190 1.0kb upstream 1.0kb upstream 5130 true chr7: 47100238-47105367 Medicago truncatula
Medtr7g114190 1.0kb upstream 1.0kb upstream 1000 false chr7: 47104368-47105367 Medicago truncatula
Medtr7g114190 1.0kb downstream 1.0kb downstream 5130 true chr7: 47099238-47104367 Medicago truncatula
Medtr7g114190 1.0kb downstream 1.0kb downstream 1000 false chr7: 47099238-47100237 Medicago truncatula
Medtr7g114190 2.0kb upstream 2.0kb upstream 6130 true chr7: 47100238-47106367 Medicago truncatula
Medtr7g114190 2.0kb upstream 2.0kb upstream 2000 false chr7: 47104368-47106367 Medicago truncatula
Medtr7g114190 2.0kb downstream 2.0kb downstream 6130 true chr7: 47098238-47104367 Medicago truncatula
Medtr7g114190 2.0kb downstream 2.0kb downstream 2000 false chr7: 47098238-47100237 Medicago truncatula
Medtr7g114190 5.0kb upstream 5.0kb upstream 9130 true chr7: 47100238-47109367 Medicago truncatula
Medtr7g114190 5.0kb upstream 5.0kb upstream 5000 false chr7: 47104368-47109367 Medicago truncatula
Medtr7g114190 5.0kb downstream 5.0kb downstream 9130 true chr7: 47095238-47104367 Medicago truncatula
Medtr7g114190 5.0kb downstream 5.0kb downstream 5000 false chr7: 47095238-47100237 Medicago truncatula
Medtr7g114190 10.0kb upstream 10.0kb upstream 14130 true chr7: 47100238-47114367 Medicago truncatula
Medtr7g114190 10.0kb upstream 10.0kb upstream 10000 false chr7: 47104368-47114367 Medicago truncatula
Medtr7g114190 10.0kb downstream 10.0kb downstream 14130 true chr7: 47090238-47104367 Medicago truncatula
Medtr7g114190 10.0kb downstream 10.0kb downstream 10000 false chr7: 47090238-47100237 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792526 5273 Angiosperm View MSA
122316405 5265 Fabidae View MSA
124037084 5270 Rosid View MSA
123755263 5271 Pentapetalae View MSA
122798079 5272 Eudicot View MSA
121063750 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.054     Low  
cufflinks 0.042     Low  
cufflinks 0.089       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain