Gene : Medtr7g116320 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31500:SF22 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Description:  AT hook motif DNA-binding family protein
Genomic Order:  6038 Name:  ? Medtr7g116320
Secondary Identifier:  ? PAC:31083450
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g116320 0.5kb upstream 0.5kb upstream 5191 true chr7: 47960908-47966098 Medicago truncatula
Medtr7g116320 0.5kb upstream 0.5kb upstream 500 false chr7: 47960908-47961407 Medicago truncatula
Medtr7g116320 0.5kb downstream 0.5kb downstream 5191 true chr7: 47961408-47966598 Medicago truncatula
Medtr7g116320 0.5kb downstream 0.5kb downstream 500 false chr7: 47966099-47966598 Medicago truncatula
Medtr7g116320 1.0kb upstream 1.0kb upstream 5691 true chr7: 47960408-47966098 Medicago truncatula
Medtr7g116320 1.0kb upstream 1.0kb upstream 1000 false chr7: 47960408-47961407 Medicago truncatula
Medtr7g116320 1.0kb downstream 1.0kb downstream 5691 true chr7: 47961408-47967098 Medicago truncatula
Medtr7g116320 1.0kb downstream 1.0kb downstream 1000 false chr7: 47966099-47967098 Medicago truncatula
Medtr7g116320 2.0kb upstream 2.0kb upstream 6691 true chr7: 47959408-47966098 Medicago truncatula
Medtr7g116320 2.0kb upstream 2.0kb upstream 2000 false chr7: 47959408-47961407 Medicago truncatula
Medtr7g116320 2.0kb downstream 2.0kb downstream 6691 true chr7: 47961408-47968098 Medicago truncatula
Medtr7g116320 2.0kb downstream 2.0kb downstream 2000 false chr7: 47966099-47968098 Medicago truncatula
Medtr7g116320 5.0kb upstream 5.0kb upstream 9691 true chr7: 47956408-47966098 Medicago truncatula
Medtr7g116320 5.0kb upstream 5.0kb upstream 5000 false chr7: 47956408-47961407 Medicago truncatula
Medtr7g116320 5.0kb downstream 5.0kb downstream 9691 true chr7: 47961408-47971098 Medicago truncatula
Medtr7g116320 5.0kb downstream 5.0kb downstream 5000 false chr7: 47966099-47971098 Medicago truncatula
Medtr7g116320 10.0kb upstream 10.0kb upstream 14691 true chr7: 47951408-47966098 Medicago truncatula
Medtr7g116320 10.0kb upstream 10.0kb upstream 10000 false chr7: 47951408-47961407 Medicago truncatula
Medtr7g116320 10.0kb downstream 10.0kb downstream 14691 true chr7: 47961408-47976098 Medicago truncatula
Medtr7g116320 10.0kb downstream 10.0kb downstream 10000 false chr7: 47966099-47976098 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307139 5265 Fabidae View MSA
124063425 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.988        
cufflinks 5.52        
cufflinks 8.191       High
cufflinks 2.719        
cufflinks 6.33        
cufflinks 1.532        
cufflinks 1.127       Low
cufflinks 6.576        
cufflinks 0.841       Low

0 Strain