Gene : Medtr7g116720 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12416:SF2 - RRNA-PROCESSING PROTEIN FCF1 HOMOLOG Description:  rRNA-processing protein PIN domain protein
Genomic Order:  6070 Name:  ? Medtr7g116720
Secondary Identifier:  ? PAC:31079830
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g116720 0.5kb upstream 0.5kb upstream 4215 true chr7: 48200196-48204410 Medicago truncatula
Medtr7g116720 0.5kb upstream 0.5kb upstream 500 false chr7: 48203911-48204410 Medicago truncatula
Medtr7g116720 0.5kb downstream 0.5kb downstream 4215 true chr7: 48199696-48203910 Medicago truncatula
Medtr7g116720 0.5kb downstream 0.5kb downstream 500 false chr7: 48199696-48200195 Medicago truncatula
Medtr7g116720 1.0kb upstream 1.0kb upstream 4715 true chr7: 48200196-48204910 Medicago truncatula
Medtr7g116720 1.0kb upstream 1.0kb upstream 1000 false chr7: 48203911-48204910 Medicago truncatula
Medtr7g116720 1.0kb downstream 1.0kb downstream 4715 true chr7: 48199196-48203910 Medicago truncatula
Medtr7g116720 1.0kb downstream 1.0kb downstream 1000 false chr7: 48199196-48200195 Medicago truncatula
Medtr7g116720 2.0kb upstream 2.0kb upstream 5715 true chr7: 48200196-48205910 Medicago truncatula
Medtr7g116720 2.0kb upstream 2.0kb upstream 2000 false chr7: 48203911-48205910 Medicago truncatula
Medtr7g116720 2.0kb downstream 2.0kb downstream 5715 true chr7: 48198196-48203910 Medicago truncatula
Medtr7g116720 2.0kb downstream 2.0kb downstream 2000 false chr7: 48198196-48200195 Medicago truncatula
Medtr7g116720 5.0kb upstream 5.0kb upstream 8715 true chr7: 48200196-48208910 Medicago truncatula
Medtr7g116720 5.0kb upstream 5.0kb upstream 5000 false chr7: 48203911-48208910 Medicago truncatula
Medtr7g116720 5.0kb downstream 5.0kb downstream 8715 true chr7: 48195196-48203910 Medicago truncatula
Medtr7g116720 5.0kb downstream 5.0kb downstream 5000 false chr7: 48195196-48200195 Medicago truncatula
Medtr7g116720 10.0kb upstream 10.0kb upstream 13715 true chr7: 48200196-48213910 Medicago truncatula
Medtr7g116720 10.0kb upstream 10.0kb upstream 10000 false chr7: 48203911-48213910 Medicago truncatula
Medtr7g116720 10.0kb downstream 10.0kb downstream 13715 true chr7: 48190196-48203910 Medicago truncatula
Medtr7g116720 10.0kb downstream 10.0kb downstream 10000 false chr7: 48190196-48200195 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300210 5265 Fabidae View MSA
124074295 5270 Rosid View MSA
123738427 5271 Pentapetalae View MSA
122793341 5272 Eudicot View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.856        
cufflinks 4.598        
cufflinks 5.914        
cufflinks 2.688       Low
cufflinks 6.415       High
cufflinks 1.819       Low
cufflinks 5.196        
cufflinks 5.039        
cufflinks 3.123        

0 Strain