Gene : Medtr7g107580 M. truncatula Mt4.0v1
Defline:  (1 of 3) KOG0144 - RNA-binding protein CUGBP1/BRUNO (RRM superfamily) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  5440 Name:  ? Medtr7g107580
Secondary Identifier:  ? PAC:31080154
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g107580 0.5kb upstream 0.5kb upstream 5568 true chr7: 43885583-43891150 Medicago truncatula
Medtr7g107580 0.5kb upstream 0.5kb upstream 500 false chr7: 43890651-43891150 Medicago truncatula
Medtr7g107580 0.5kb downstream 0.5kb downstream 5568 true chr7: 43885083-43890650 Medicago truncatula
Medtr7g107580 0.5kb downstream 0.5kb downstream 500 false chr7: 43885083-43885582 Medicago truncatula
Medtr7g107580 1.0kb upstream 1.0kb upstream 6068 true chr7: 43885583-43891650 Medicago truncatula
Medtr7g107580 1.0kb upstream 1.0kb upstream 1000 false chr7: 43890651-43891650 Medicago truncatula
Medtr7g107580 1.0kb downstream 1.0kb downstream 6068 true chr7: 43884583-43890650 Medicago truncatula
Medtr7g107580 1.0kb downstream 1.0kb downstream 1000 false chr7: 43884583-43885582 Medicago truncatula
Medtr7g107580 2.0kb upstream 2.0kb upstream 7068 true chr7: 43885583-43892650 Medicago truncatula
Medtr7g107580 2.0kb upstream 2.0kb upstream 2000 false chr7: 43890651-43892650 Medicago truncatula
Medtr7g107580 2.0kb downstream 2.0kb downstream 7068 true chr7: 43883583-43890650 Medicago truncatula
Medtr7g107580 2.0kb downstream 2.0kb downstream 2000 false chr7: 43883583-43885582 Medicago truncatula
Medtr7g107580 5.0kb upstream 5.0kb upstream 10068 true chr7: 43885583-43895650 Medicago truncatula
Medtr7g107580 5.0kb upstream 5.0kb upstream 5000 false chr7: 43890651-43895650 Medicago truncatula
Medtr7g107580 5.0kb downstream 5.0kb downstream 10068 true chr7: 43880583-43890650 Medicago truncatula
Medtr7g107580 5.0kb downstream 5.0kb downstream 5000 false chr7: 43880583-43885582 Medicago truncatula
Medtr7g107580 10.0kb upstream 10.0kb upstream 15068 true chr7: 43885583-43900650 Medicago truncatula
Medtr7g107580 10.0kb upstream 10.0kb upstream 10000 false chr7: 43890651-43900650 Medicago truncatula
Medtr7g107580 10.0kb downstream 10.0kb downstream 15068 true chr7: 43875583-43890650 Medicago truncatula
Medtr7g107580 10.0kb downstream 10.0kb downstream 10000 false chr7: 43875583-43885582 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300167 5265 Fabidae View MSA
124062995 5270 Rosid View MSA
123747202 5271 Pentapetalae View MSA
122791871 5272 Eudicot View MSA
122044702 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349683 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.162       High
cufflinks 5.765        
cufflinks 4.541        
cufflinks 1.781       Low
cufflinks 5.638        
cufflinks 1.398       Low
cufflinks 3.219        
cufflinks 4.357        
cufflinks 3.228        

0 Strain