Gene : Medtr8g030930 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR31375:SF10 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN-RELATED Description:  polygalacturonase/glycoside hydrolase family protein
Genomic Order:  1520 Name:  ? Medtr8g030930
Secondary Identifier:  ? PAC:31072669
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g030930 0.5kb upstream 0.5kb upstream 2058   true chr8: 11530999-11533056 Medicago truncatula
Medtr8g030930 0.5kb upstream 0.5kb upstream 500   false chr8: 11530999-11531498 Medicago truncatula
Medtr8g030930 0.5kb downstream 0.5kb downstream 2058   true chr8: 11531499-11533556 Medicago truncatula
Medtr8g030930 0.5kb downstream 0.5kb downstream 500   false chr8: 11533057-11533556 Medicago truncatula
Medtr8g030930 1.0kb upstream 1.0kb upstream 2558   true chr8: 11530499-11533056 Medicago truncatula
Medtr8g030930 1.0kb upstream 1.0kb upstream 1000   false chr8: 11530499-11531498 Medicago truncatula
Medtr8g030930 1.0kb downstream 1.0kb downstream 2558   true chr8: 11531499-11534056 Medicago truncatula
Medtr8g030930 1.0kb downstream 1.0kb downstream 1000   false chr8: 11533057-11534056 Medicago truncatula
Medtr8g030930 2.0kb upstream 2.0kb upstream 3558   true chr8: 11529499-11533056 Medicago truncatula
Medtr8g030930 2.0kb upstream 2.0kb upstream 2000   false chr8: 11529499-11531498 Medicago truncatula
Medtr8g030930 2.0kb downstream 2.0kb downstream 3558   true chr8: 11531499-11535056 Medicago truncatula
Medtr8g030930 2.0kb downstream 2.0kb downstream 2000   false chr8: 11533057-11535056 Medicago truncatula
Medtr8g030930 5.0kb upstream 5.0kb upstream 6558   true chr8: 11526499-11533056 Medicago truncatula
Medtr8g030930 5.0kb upstream 5.0kb upstream 5000   false chr8: 11526499-11531498 Medicago truncatula
Medtr8g030930 5.0kb downstream 5.0kb downstream 6558   true chr8: 11531499-11538056 Medicago truncatula
Medtr8g030930 5.0kb downstream 5.0kb downstream 5000   false chr8: 11533057-11538056 Medicago truncatula
Medtr8g030930 10.0kb upstream 10.0kb upstream 11558   true chr8: 11521499-11533056 Medicago truncatula
Medtr8g030930 10.0kb upstream 10.0kb upstream 10000   false chr8: 11521499-11531498 Medicago truncatula
Medtr8g030930 10.0kb downstream 10.0kb downstream 11558   true chr8: 11531499-11543056 Medicago truncatula
Medtr8g030930 10.0kb downstream 10.0kb downstream 10000   false chr8: 11533057-11543056 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315226 5265 Fabidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain