Gene : Medtr8g033220 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Description:  MADS-box transcription factor
Genomic Order:  1697 Name:  ? Medtr8g033220
Secondary Identifier:  ? PAC:31070818
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g033220 0.5kb upstream 0.5kb upstream 10203   true chr8: 12770971-12781173 Medicago truncatula
Medtr8g033220 0.5kb upstream 0.5kb upstream 500   false chr8: 12770971-12771470 Medicago truncatula
Medtr8g033220 0.5kb downstream 0.5kb downstream 10203   true chr8: 12771471-12781673 Medicago truncatula
Medtr8g033220 0.5kb downstream 0.5kb downstream 500   false chr8: 12781174-12781673 Medicago truncatula
Medtr8g033220 1.0kb upstream 1.0kb upstream 10703   true chr8: 12770471-12781173 Medicago truncatula
Medtr8g033220 1.0kb upstream 1.0kb upstream 1000   false chr8: 12770471-12771470 Medicago truncatula
Medtr8g033220 1.0kb downstream 1.0kb downstream 10703   true chr8: 12771471-12782173 Medicago truncatula
Medtr8g033220 1.0kb downstream 1.0kb downstream 1000   false chr8: 12781174-12782173 Medicago truncatula
Medtr8g033220 2.0kb upstream 2.0kb upstream 11703   true chr8: 12769471-12781173 Medicago truncatula
Medtr8g033220 2.0kb upstream 2.0kb upstream 2000   false chr8: 12769471-12771470 Medicago truncatula
Medtr8g033220 2.0kb downstream 2.0kb downstream 11703   true chr8: 12771471-12783173 Medicago truncatula
Medtr8g033220 2.0kb downstream 2.0kb downstream 2000   false chr8: 12781174-12783173 Medicago truncatula
Medtr8g033220 5.0kb upstream 5.0kb upstream 14703   true chr8: 12766471-12781173 Medicago truncatula
Medtr8g033220 5.0kb upstream 5.0kb upstream 5000   false chr8: 12766471-12771470 Medicago truncatula
Medtr8g033220 5.0kb downstream 5.0kb downstream 14703   true chr8: 12771471-12786173 Medicago truncatula
Medtr8g033220 5.0kb downstream 5.0kb downstream 5000   false chr8: 12781174-12786173 Medicago truncatula
Medtr8g033220 10.0kb upstream 10.0kb upstream 19703   true chr8: 12761471-12781173 Medicago truncatula
Medtr8g033220 10.0kb upstream 10.0kb upstream 10000   false chr8: 12761471-12771470 Medicago truncatula
Medtr8g033220 10.0kb downstream 10.0kb downstream 19703   true chr8: 12771471-12791173 Medicago truncatula
Medtr8g033220 10.0kb downstream 10.0kb downstream 10000   false chr8: 12781174-12791173 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311356 5265 Fabidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.628        
cufflinks 1.04       High
cufflinks 0.837        
cufflinks 0.297       Low
cufflinks 0.775        
cufflinks 0.616        
cufflinks 0.781        
cufflinks 0.876        
cufflinks 0.279       Low

0 Strain