Gene : Medtr8g023790 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21649:SF13 - LHCA2 PROTEIN Description:  light-harvesting complex I chlorophyll A/B-binding protein
Genomic Order:  1177 Name:  ? Medtr8g023790
Secondary Identifier:  ? PAC:31073382
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g023790 0.5kb upstream 0.5kb upstream 3423   true chr8: 8650676-8654098 Medicago truncatula
Medtr8g023790 0.5kb upstream 0.5kb upstream 500   false chr8: 8653599-8654098 Medicago truncatula
Medtr8g023790 0.5kb downstream 0.5kb downstream 3423   true chr8: 8650176-8653598 Medicago truncatula
Medtr8g023790 0.5kb downstream 0.5kb downstream 500   false chr8: 8650176-8650675 Medicago truncatula
Medtr8g023790 1.0kb upstream 1.0kb upstream 3923   true chr8: 8650676-8654598 Medicago truncatula
Medtr8g023790 1.0kb upstream 1.0kb upstream 1000   false chr8: 8653599-8654598 Medicago truncatula
Medtr8g023790 1.0kb downstream 1.0kb downstream 3923   true chr8: 8649676-8653598 Medicago truncatula
Medtr8g023790 1.0kb downstream 1.0kb downstream 1000   false chr8: 8649676-8650675 Medicago truncatula
Medtr8g023790 2.0kb upstream 2.0kb upstream 4923   true chr8: 8650676-8655598 Medicago truncatula
Medtr8g023790 2.0kb upstream 2.0kb upstream 2000   false chr8: 8653599-8655598 Medicago truncatula
Medtr8g023790 2.0kb downstream 2.0kb downstream 4923   true chr8: 8648676-8653598 Medicago truncatula
Medtr8g023790 2.0kb downstream 2.0kb downstream 2000   false chr8: 8648676-8650675 Medicago truncatula
Medtr8g023790 5.0kb upstream 5.0kb upstream 7923   true chr8: 8650676-8658598 Medicago truncatula
Medtr8g023790 5.0kb upstream 5.0kb upstream 5000   false chr8: 8653599-8658598 Medicago truncatula
Medtr8g023790 5.0kb downstream 5.0kb downstream 7923   true chr8: 8645676-8653598 Medicago truncatula
Medtr8g023790 5.0kb downstream 5.0kb downstream 5000   false chr8: 8645676-8650675 Medicago truncatula
Medtr8g023790 10.0kb upstream 10.0kb upstream 12923   true chr8: 8650676-8663598 Medicago truncatula
Medtr8g023790 10.0kb upstream 10.0kb upstream 10000   false chr8: 8653599-8663598 Medicago truncatula
Medtr8g023790 10.0kb downstream 10.0kb downstream 12923   true chr8: 8640676-8653598 Medicago truncatula
Medtr8g023790 10.0kb downstream 10.0kb downstream 10000   false chr8: 8640676-8650675 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309685 5265 Fabidae View MSA
124065144 5270 Rosid View MSA
123742469 5271 Pentapetalae View MSA
122790167 5272 Eudicot View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.166       Low
cufflinks 1513.248     High  
cufflinks 1163.088     High  
cufflinks 1.918        
cufflinks 1692.229     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.399        
cufflinks 1480.428     High  
cufflinks 0.603        

0 Strain