Gene : Medtr8g027160 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Description:  endoplasmic reticulum-type calcium-transporting ATPase
Genomic Order:  1268 Name:  ? Medtr8g027160
Secondary Identifier:  ? PAC:31070252
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g027160 0.5kb upstream 0.5kb upstream 5737   true chr8: 9542188-9547924 Medicago truncatula
Medtr8g027160 0.5kb upstream 0.5kb upstream 500   false chr8: 9547425-9547924 Medicago truncatula
Medtr8g027160 0.5kb downstream 0.5kb downstream 5737   true chr8: 9541688-9547424 Medicago truncatula
Medtr8g027160 0.5kb downstream 0.5kb downstream 500   false chr8: 9541688-9542187 Medicago truncatula
Medtr8g027160 1.0kb upstream 1.0kb upstream 6237   true chr8: 9542188-9548424 Medicago truncatula
Medtr8g027160 1.0kb upstream 1.0kb upstream 1000   false chr8: 9547425-9548424 Medicago truncatula
Medtr8g027160 1.0kb downstream 1.0kb downstream 6237   true chr8: 9541188-9547424 Medicago truncatula
Medtr8g027160 1.0kb downstream 1.0kb downstream 1000   false chr8: 9541188-9542187 Medicago truncatula
Medtr8g027160 2.0kb upstream 2.0kb upstream 7237   true chr8: 9542188-9549424 Medicago truncatula
Medtr8g027160 2.0kb upstream 2.0kb upstream 2000   false chr8: 9547425-9549424 Medicago truncatula
Medtr8g027160 2.0kb downstream 2.0kb downstream 7237   true chr8: 9540188-9547424 Medicago truncatula
Medtr8g027160 2.0kb downstream 2.0kb downstream 2000   false chr8: 9540188-9542187 Medicago truncatula
Medtr8g027160 5.0kb upstream 5.0kb upstream 10237   true chr8: 9542188-9552424 Medicago truncatula
Medtr8g027160 5.0kb upstream 5.0kb upstream 5000   false chr8: 9547425-9552424 Medicago truncatula
Medtr8g027160 5.0kb downstream 5.0kb downstream 10237   true chr8: 9537188-9547424 Medicago truncatula
Medtr8g027160 5.0kb downstream 5.0kb downstream 5000   false chr8: 9537188-9542187 Medicago truncatula
Medtr8g027160 10.0kb upstream 10.0kb upstream 15237   true chr8: 9542188-9557424 Medicago truncatula
Medtr8g027160 10.0kb upstream 10.0kb upstream 10000   false chr8: 9547425-9557424 Medicago truncatula
Medtr8g027160 10.0kb downstream 10.0kb downstream 15237   true chr8: 9532188-9547424 Medicago truncatula
Medtr8g027160 10.0kb downstream 10.0kb downstream 10000   false chr8: 9532188-9542187 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302927 5265 Fabidae View MSA
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.103        
cufflinks 1.021        
cufflinks 0.953       Low
cufflinks 1.46        
cufflinks 0.957       Low
cufflinks 2.127        
cufflinks 4.743       High
cufflinks 1.426        
cufflinks 4.193       High

0 Strain