Gene : Medtr8g027685 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12601:SF17 - TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  eukaryotic translation initiation factor 3 subunit
Genomic Order:  1314 Name:  ? Medtr8g027685
Secondary Identifier:  ? PAC:31074426
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g027685 0.5kb upstream 0.5kb upstream 15625   true chr8: 9966029-9981653 Medicago truncatula
Medtr8g027685 0.5kb upstream 0.5kb upstream 500   false chr8: 9981154-9981653 Medicago truncatula
Medtr8g027685 0.5kb downstream 0.5kb downstream 15625   true chr8: 9965529-9981153 Medicago truncatula
Medtr8g027685 0.5kb downstream 0.5kb downstream 500   false chr8: 9965529-9966028 Medicago truncatula
Medtr8g027685 1.0kb upstream 1.0kb upstream 16125   true chr8: 9966029-9982153 Medicago truncatula
Medtr8g027685 1.0kb upstream 1.0kb upstream 1000   false chr8: 9981154-9982153 Medicago truncatula
Medtr8g027685 1.0kb downstream 1.0kb downstream 16125   true chr8: 9965029-9981153 Medicago truncatula
Medtr8g027685 1.0kb downstream 1.0kb downstream 1000   false chr8: 9965029-9966028 Medicago truncatula
Medtr8g027685 2.0kb upstream 2.0kb upstream 17125   true chr8: 9966029-9983153 Medicago truncatula
Medtr8g027685 2.0kb upstream 2.0kb upstream 2000   false chr8: 9981154-9983153 Medicago truncatula
Medtr8g027685 2.0kb downstream 2.0kb downstream 17125   true chr8: 9964029-9981153 Medicago truncatula
Medtr8g027685 2.0kb downstream 2.0kb downstream 2000   false chr8: 9964029-9966028 Medicago truncatula
Medtr8g027685 5.0kb upstream 5.0kb upstream 20125   true chr8: 9966029-9986153 Medicago truncatula
Medtr8g027685 5.0kb upstream 5.0kb upstream 5000   false chr8: 9981154-9986153 Medicago truncatula
Medtr8g027685 5.0kb downstream 5.0kb downstream 20125   true chr8: 9961029-9981153 Medicago truncatula
Medtr8g027685 5.0kb downstream 5.0kb downstream 5000   false chr8: 9961029-9966028 Medicago truncatula
Medtr8g027685 10.0kb upstream 10.0kb upstream 25125   true chr8: 9966029-9991153 Medicago truncatula
Medtr8g027685 10.0kb upstream 10.0kb upstream 10000   false chr8: 9981154-9991153 Medicago truncatula
Medtr8g027685 10.0kb downstream 10.0kb downstream 25125   true chr8: 9956029-9981153 Medicago truncatula
Medtr8g027685 10.0kb downstream 10.0kb downstream 10000   false chr8: 9956029-9966028 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305072 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.438        
cufflinks 30.508     High  
cufflinks 37.446     High High
cufflinks 0.02     Low Low
cufflinks 34.886     High High
cufflinks 0.04     Low Low
cufflinks 0.076        
cufflinks 32.559     High  
cufflinks 0.543        

0 Strain