Gene : Medtr8g027810 M. truncatula Mt4.0v1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  1335 Name:  ? Medtr8g027810
Secondary Identifier:  ? PAC:31074705
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g027810 0.5kb upstream 0.5kb upstream 4163   true chr8: 10157214-10161376 Medicago truncatula
Medtr8g027810 0.5kb upstream 0.5kb upstream 500   false chr8: 10160877-10161376 Medicago truncatula
Medtr8g027810 0.5kb downstream 0.5kb downstream 4163   true chr8: 10156714-10160876 Medicago truncatula
Medtr8g027810 0.5kb downstream 0.5kb downstream 500   false chr8: 10156714-10157213 Medicago truncatula
Medtr8g027810 1.0kb upstream 1.0kb upstream 4663   true chr8: 10157214-10161876 Medicago truncatula
Medtr8g027810 1.0kb upstream 1.0kb upstream 1000   false chr8: 10160877-10161876 Medicago truncatula
Medtr8g027810 1.0kb downstream 1.0kb downstream 4663   true chr8: 10156214-10160876 Medicago truncatula
Medtr8g027810 1.0kb downstream 1.0kb downstream 1000   false chr8: 10156214-10157213 Medicago truncatula
Medtr8g027810 2.0kb upstream 2.0kb upstream 5663   true chr8: 10157214-10162876 Medicago truncatula
Medtr8g027810 2.0kb upstream 2.0kb upstream 2000   false chr8: 10160877-10162876 Medicago truncatula
Medtr8g027810 2.0kb downstream 2.0kb downstream 5663   true chr8: 10155214-10160876 Medicago truncatula
Medtr8g027810 2.0kb downstream 2.0kb downstream 2000   false chr8: 10155214-10157213 Medicago truncatula
Medtr8g027810 5.0kb upstream 5.0kb upstream 8663   true chr8: 10157214-10165876 Medicago truncatula
Medtr8g027810 5.0kb upstream 5.0kb upstream 5000   false chr8: 10160877-10165876 Medicago truncatula
Medtr8g027810 5.0kb downstream 5.0kb downstream 8663   true chr8: 10152214-10160876 Medicago truncatula
Medtr8g027810 5.0kb downstream 5.0kb downstream 5000   false chr8: 10152214-10157213 Medicago truncatula
Medtr8g027810 10.0kb upstream 10.0kb upstream 13663   true chr8: 10157214-10170876 Medicago truncatula
Medtr8g027810 10.0kb upstream 10.0kb upstream 10000   false chr8: 10160877-10170876 Medicago truncatula
Medtr8g027810 10.0kb downstream 10.0kb downstream 13663   true chr8: 10147214-10160876 Medicago truncatula
Medtr8g027810 10.0kb downstream 10.0kb downstream 10000   false chr8: 10147214-10157213 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312298 5265 Fabidae View MSA
124064804 5270 Rosid View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.228        
cufflinks 3.77        
cufflinks 3.038        
cufflinks 0.117       Low
cufflinks 6.499       High
cufflinks 0.117     Low Low
cufflinks 0.315        
cufflinks 3.673        
cufflinks 0.146        

0 Strain