Gene : Medtr8g028480 M. truncatula Mt4.0v1
Defline:  (1 of 72) PF03168 - Late embryogenesis abundant protein (LEA_2) Description:  late embryogenesis abundant protein
Genomic Order:  1428 Name:  ? Medtr8g028480
Secondary Identifier:  ? PAC:31072638
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g028480 0.5kb upstream 0.5kb upstream 1421   true chr8: 10819001-10820421 Medicago truncatula
Medtr8g028480 0.5kb upstream 0.5kb upstream 500   false chr8: 10819922-10820421 Medicago truncatula
Medtr8g028480 0.5kb downstream 0.5kb downstream 1421   true chr8: 10818501-10819921 Medicago truncatula
Medtr8g028480 0.5kb downstream 0.5kb downstream 500   false chr8: 10818501-10819000 Medicago truncatula
Medtr8g028480 1.0kb upstream 1.0kb upstream 1921   true chr8: 10819001-10820921 Medicago truncatula
Medtr8g028480 1.0kb upstream 1.0kb upstream 1000   false chr8: 10819922-10820921 Medicago truncatula
Medtr8g028480 1.0kb downstream 1.0kb downstream 1921   true chr8: 10818001-10819921 Medicago truncatula
Medtr8g028480 1.0kb downstream 1.0kb downstream 1000   false chr8: 10818001-10819000 Medicago truncatula
Medtr8g028480 2.0kb upstream 2.0kb upstream 2921   true chr8: 10819001-10821921 Medicago truncatula
Medtr8g028480 2.0kb upstream 2.0kb upstream 2000   false chr8: 10819922-10821921 Medicago truncatula
Medtr8g028480 2.0kb downstream 2.0kb downstream 2921   true chr8: 10817001-10819921 Medicago truncatula
Medtr8g028480 2.0kb downstream 2.0kb downstream 2000   false chr8: 10817001-10819000 Medicago truncatula
Medtr8g028480 5.0kb upstream 5.0kb upstream 5921   true chr8: 10819001-10824921 Medicago truncatula
Medtr8g028480 5.0kb upstream 5.0kb upstream 5000   false chr8: 10819922-10824921 Medicago truncatula
Medtr8g028480 5.0kb downstream 5.0kb downstream 5921   true chr8: 10814001-10819921 Medicago truncatula
Medtr8g028480 5.0kb downstream 5.0kb downstream 5000   false chr8: 10814001-10819000 Medicago truncatula
Medtr8g028480 10.0kb upstream 10.0kb upstream 10921   true chr8: 10819001-10829921 Medicago truncatula
Medtr8g028480 10.0kb upstream 10.0kb upstream 10000   false chr8: 10819922-10829921 Medicago truncatula
Medtr8g028480 10.0kb downstream 10.0kb downstream 10921   true chr8: 10809001-10819921 Medicago truncatula
Medtr8g028480 10.0kb downstream 10.0kb downstream 10000   false chr8: 10809001-10819000 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311929 5265 Fabidae View MSA
124063327 5270 Rosid View MSA
123749565 5271 Pentapetalae View MSA
122795600 5272 Eudicot View MSA
122043658 5273 Angiosperm View MSA
121348077 5274 Embryophyte View MSA
123380721 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.209       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low Low
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.331        
cufflinks 1.548        
cufflinks 0.028     Low Low
cufflinks 1.377        

0 Strain