Gene : Medtr8g009020 M. truncatula Mt4.0v1
Defline:  (1 of 27) PTHR23042//PTHR23042:SF57 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS Description:  helix loop helix DNA-binding domain protein
Genomic Order:  266 Name:  ? Medtr8g009020
Secondary Identifier:  ? PAC:31070839
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g009020 0.5kb upstream 0.5kb upstream 3969   true chr8: 1991757-1995725 Medicago truncatula
Medtr8g009020 0.5kb upstream 0.5kb upstream 500   false chr8: 1995226-1995725 Medicago truncatula
Medtr8g009020 0.5kb downstream 0.5kb downstream 3969   true chr8: 1991257-1995225 Medicago truncatula
Medtr8g009020 0.5kb downstream 0.5kb downstream 500   false chr8: 1991257-1991756 Medicago truncatula
Medtr8g009020 1.0kb upstream 1.0kb upstream 4469   true chr8: 1991757-1996225 Medicago truncatula
Medtr8g009020 1.0kb upstream 1.0kb upstream 1000   false chr8: 1995226-1996225 Medicago truncatula
Medtr8g009020 1.0kb downstream 1.0kb downstream 4469   true chr8: 1990757-1995225 Medicago truncatula
Medtr8g009020 1.0kb downstream 1.0kb downstream 1000   false chr8: 1990757-1991756 Medicago truncatula
Medtr8g009020 2.0kb upstream 2.0kb upstream 5469   true chr8: 1991757-1997225 Medicago truncatula
Medtr8g009020 2.0kb upstream 2.0kb upstream 2000   false chr8: 1995226-1997225 Medicago truncatula
Medtr8g009020 2.0kb downstream 2.0kb downstream 5469   true chr8: 1989757-1995225 Medicago truncatula
Medtr8g009020 2.0kb downstream 2.0kb downstream 2000   false chr8: 1989757-1991756 Medicago truncatula
Medtr8g009020 5.0kb upstream 5.0kb upstream 8469   true chr8: 1991757-2000225 Medicago truncatula
Medtr8g009020 5.0kb upstream 5.0kb upstream 5000   false chr8: 1995226-2000225 Medicago truncatula
Medtr8g009020 5.0kb downstream 5.0kb downstream 8469   true chr8: 1986757-1995225 Medicago truncatula
Medtr8g009020 5.0kb downstream 5.0kb downstream 5000   false chr8: 1986757-1991756 Medicago truncatula
Medtr8g009020 10.0kb upstream 10.0kb upstream 13469   true chr8: 1991757-2005225 Medicago truncatula
Medtr8g009020 10.0kb upstream 10.0kb upstream 10000   false chr8: 1995226-2005225 Medicago truncatula
Medtr8g009020 10.0kb downstream 10.0kb downstream 13469   true chr8: 1981757-1995225 Medicago truncatula
Medtr8g009020 10.0kb downstream 10.0kb downstream 10000   false chr8: 1981757-1991756 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296971 5265 Fabidae View MSA
124070459 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.131        
cufflinks 0.089        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.36       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.111        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain