Gene : Medtr8g010080 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase
Genomic Order:  355 Name:  ? Medtr8g010080
Secondary Identifier:  ? PAC:31075344
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g010080 0.5kb upstream 0.5kb upstream 3061   true chr8: 2548263-2551323 Medicago truncatula
Medtr8g010080 0.5kb upstream 0.5kb upstream 500   false chr8: 2548263-2548762 Medicago truncatula
Medtr8g010080 0.5kb downstream 0.5kb downstream 3061   true chr8: 2548763-2551823 Medicago truncatula
Medtr8g010080 0.5kb downstream 0.5kb downstream 500   false chr8: 2551324-2551823 Medicago truncatula
Medtr8g010080 1.0kb upstream 1.0kb upstream 3561   true chr8: 2547763-2551323 Medicago truncatula
Medtr8g010080 1.0kb upstream 1.0kb upstream 1000   false chr8: 2547763-2548762 Medicago truncatula
Medtr8g010080 1.0kb downstream 1.0kb downstream 3561   true chr8: 2548763-2552323 Medicago truncatula
Medtr8g010080 1.0kb downstream 1.0kb downstream 1000   false chr8: 2551324-2552323 Medicago truncatula
Medtr8g010080 2.0kb upstream 2.0kb upstream 4561   true chr8: 2546763-2551323 Medicago truncatula
Medtr8g010080 2.0kb upstream 2.0kb upstream 2000   false chr8: 2546763-2548762 Medicago truncatula
Medtr8g010080 2.0kb downstream 2.0kb downstream 4561   true chr8: 2548763-2553323 Medicago truncatula
Medtr8g010080 2.0kb downstream 2.0kb downstream 2000   false chr8: 2551324-2553323 Medicago truncatula
Medtr8g010080 5.0kb upstream 5.0kb upstream 7561   true chr8: 2543763-2551323 Medicago truncatula
Medtr8g010080 5.0kb upstream 5.0kb upstream 5000   false chr8: 2543763-2548762 Medicago truncatula
Medtr8g010080 5.0kb downstream 5.0kb downstream 7561   true chr8: 2548763-2556323 Medicago truncatula
Medtr8g010080 5.0kb downstream 5.0kb downstream 5000   false chr8: 2551324-2556323 Medicago truncatula
Medtr8g010080 10.0kb upstream 10.0kb upstream 12561   true chr8: 2538763-2551323 Medicago truncatula
Medtr8g010080 10.0kb upstream 10.0kb upstream 10000   false chr8: 2538763-2548762 Medicago truncatula
Medtr8g010080 10.0kb downstream 10.0kb downstream 12561   true chr8: 2548763-2561323 Medicago truncatula
Medtr8g010080 10.0kb downstream 10.0kb downstream 10000   false chr8: 2551324-2561323 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297857 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  

0 Strain