Gene : Medtr8g010040 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase
Genomic Order:  351 Name:  ? Medtr8g010040
Secondary Identifier:  ? PAC:31075173
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g010040 0.5kb upstream 0.5kb upstream 4752   true chr8: 2521627-2526378 Medicago truncatula
Medtr8g010040 0.5kb upstream 0.5kb upstream 500   false chr8: 2521627-2522126 Medicago truncatula
Medtr8g010040 0.5kb downstream 0.5kb downstream 4752   true chr8: 2522127-2526878 Medicago truncatula
Medtr8g010040 0.5kb downstream 0.5kb downstream 500   false chr8: 2526379-2526878 Medicago truncatula
Medtr8g010040 1.0kb upstream 1.0kb upstream 5252   true chr8: 2521127-2526378 Medicago truncatula
Medtr8g010040 1.0kb upstream 1.0kb upstream 1000   false chr8: 2521127-2522126 Medicago truncatula
Medtr8g010040 1.0kb downstream 1.0kb downstream 5252   true chr8: 2522127-2527378 Medicago truncatula
Medtr8g010040 1.0kb downstream 1.0kb downstream 1000   false chr8: 2526379-2527378 Medicago truncatula
Medtr8g010040 2.0kb upstream 2.0kb upstream 6252   true chr8: 2520127-2526378 Medicago truncatula
Medtr8g010040 2.0kb upstream 2.0kb upstream 2000   false chr8: 2520127-2522126 Medicago truncatula
Medtr8g010040 2.0kb downstream 2.0kb downstream 6252   true chr8: 2522127-2528378 Medicago truncatula
Medtr8g010040 2.0kb downstream 2.0kb downstream 2000   false chr8: 2526379-2528378 Medicago truncatula
Medtr8g010040 5.0kb upstream 5.0kb upstream 9252   true chr8: 2517127-2526378 Medicago truncatula
Medtr8g010040 5.0kb upstream 5.0kb upstream 5000   false chr8: 2517127-2522126 Medicago truncatula
Medtr8g010040 5.0kb downstream 5.0kb downstream 9252   true chr8: 2522127-2531378 Medicago truncatula
Medtr8g010040 5.0kb downstream 5.0kb downstream 5000   false chr8: 2526379-2531378 Medicago truncatula
Medtr8g010040 10.0kb upstream 10.0kb upstream 14252   true chr8: 2512127-2526378 Medicago truncatula
Medtr8g010040 10.0kb upstream 10.0kb upstream 10000   false chr8: 2512127-2522126 Medicago truncatula
Medtr8g010040 10.0kb downstream 10.0kb downstream 14252   true chr8: 2522127-2536378 Medicago truncatula
Medtr8g010040 10.0kb downstream 10.0kb downstream 10000   false chr8: 2526379-2536378 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297857 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain