Gene : Medtr8g012390 M. truncatula Mt4.0v1
Defline:  (1 of 7) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Description:  heavy metal P-type ATPase
Genomic Order:  505 Name:  ? Medtr8g012390
Secondary Identifier:  ? PAC:31075540
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g012390 0.5kb upstream 0.5kb upstream 6982   true chr8: 3520831-3527812 Medicago truncatula
Medtr8g012390 0.5kb upstream 0.5kb upstream 500   false chr8: 3520831-3521330 Medicago truncatula
Medtr8g012390 0.5kb downstream 0.5kb downstream 6982   true chr8: 3521331-3528312 Medicago truncatula
Medtr8g012390 0.5kb downstream 0.5kb downstream 500   false chr8: 3527813-3528312 Medicago truncatula
Medtr8g012390 1.0kb upstream 1.0kb upstream 7482   true chr8: 3520331-3527812 Medicago truncatula
Medtr8g012390 1.0kb upstream 1.0kb upstream 1000   false chr8: 3520331-3521330 Medicago truncatula
Medtr8g012390 1.0kb downstream 1.0kb downstream 7482   true chr8: 3521331-3528812 Medicago truncatula
Medtr8g012390 1.0kb downstream 1.0kb downstream 1000   false chr8: 3527813-3528812 Medicago truncatula
Medtr8g012390 2.0kb upstream 2.0kb upstream 8482   true chr8: 3519331-3527812 Medicago truncatula
Medtr8g012390 2.0kb upstream 2.0kb upstream 2000   false chr8: 3519331-3521330 Medicago truncatula
Medtr8g012390 2.0kb downstream 2.0kb downstream 8482   true chr8: 3521331-3529812 Medicago truncatula
Medtr8g012390 2.0kb downstream 2.0kb downstream 2000   false chr8: 3527813-3529812 Medicago truncatula
Medtr8g012390 5.0kb upstream 5.0kb upstream 11482   true chr8: 3516331-3527812 Medicago truncatula
Medtr8g012390 5.0kb upstream 5.0kb upstream 5000   false chr8: 3516331-3521330 Medicago truncatula
Medtr8g012390 5.0kb downstream 5.0kb downstream 11482   true chr8: 3521331-3532812 Medicago truncatula
Medtr8g012390 5.0kb downstream 5.0kb downstream 5000   false chr8: 3527813-3532812 Medicago truncatula
Medtr8g012390 10.0kb upstream 10.0kb upstream 16482   true chr8: 3511331-3527812 Medicago truncatula
Medtr8g012390 10.0kb upstream 10.0kb upstream 10000   false chr8: 3511331-3521330 Medicago truncatula
Medtr8g012390 10.0kb downstream 10.0kb downstream 16482   true chr8: 3521331-3537812 Medicago truncatula
Medtr8g012390 10.0kb downstream 10.0kb downstream 10000   false chr8: 3527813-3537812 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305336 5265 Fabidae View MSA
124069663 5270 Rosid View MSA
123747003 5271 Pentapetalae View MSA
122794490 5272 Eudicot View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.006       Low
cufflinks 2.7        
cufflinks 1.837        
cufflinks 1.466        
cufflinks 1.756        
cufflinks 1.953        
cufflinks 6.74       High
cufflinks 1.605        
cufflinks 5.928       High

0 Strain