Gene : Medtr8g012620 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31413:SF4 - NINJA-FAMILY PROTEIN AFP1-RELATED Description:  ninja-family protein AFP1
Genomic Order:  529 Name:  ? Medtr8g012620
Secondary Identifier:  ? PAC:31071633
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g012620 0.5kb upstream 0.5kb upstream 2083   true chr8: 3687774-3689856 Medicago truncatula
Medtr8g012620 0.5kb upstream 0.5kb upstream 500   false chr8: 3687774-3688273 Medicago truncatula
Medtr8g012620 0.5kb downstream 0.5kb downstream 2083   true chr8: 3688274-3690356 Medicago truncatula
Medtr8g012620 0.5kb downstream 0.5kb downstream 500   false chr8: 3689857-3690356 Medicago truncatula
Medtr8g012620 1.0kb upstream 1.0kb upstream 2583   true chr8: 3687274-3689856 Medicago truncatula
Medtr8g012620 1.0kb upstream 1.0kb upstream 1000   false chr8: 3687274-3688273 Medicago truncatula
Medtr8g012620 1.0kb downstream 1.0kb downstream 2583   true chr8: 3688274-3690856 Medicago truncatula
Medtr8g012620 1.0kb downstream 1.0kb downstream 1000   false chr8: 3689857-3690856 Medicago truncatula
Medtr8g012620 2.0kb upstream 2.0kb upstream 3583   true chr8: 3686274-3689856 Medicago truncatula
Medtr8g012620 2.0kb upstream 2.0kb upstream 2000   false chr8: 3686274-3688273 Medicago truncatula
Medtr8g012620 2.0kb downstream 2.0kb downstream 3583   true chr8: 3688274-3691856 Medicago truncatula
Medtr8g012620 2.0kb downstream 2.0kb downstream 2000   false chr8: 3689857-3691856 Medicago truncatula
Medtr8g012620 5.0kb upstream 5.0kb upstream 6583   true chr8: 3683274-3689856 Medicago truncatula
Medtr8g012620 5.0kb upstream 5.0kb upstream 5000   false chr8: 3683274-3688273 Medicago truncatula
Medtr8g012620 5.0kb downstream 5.0kb downstream 6583   true chr8: 3688274-3694856 Medicago truncatula
Medtr8g012620 5.0kb downstream 5.0kb downstream 5000   false chr8: 3689857-3694856 Medicago truncatula
Medtr8g012620 10.0kb upstream 10.0kb upstream 11583   true chr8: 3678274-3689856 Medicago truncatula
Medtr8g012620 10.0kb upstream 10.0kb upstream 10000   false chr8: 3678274-3688273 Medicago truncatula
Medtr8g012620 10.0kb downstream 10.0kb downstream 11583   true chr8: 3688274-3699856 Medicago truncatula
Medtr8g012620 10.0kb downstream 10.0kb downstream 10000   false chr8: 3689857-3699856 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301661 5265 Fabidae View MSA
124071046 5270 Rosid View MSA
123753389 5271 Pentapetalae View MSA
122792096 5272 Eudicot View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.443       High
cufflinks 0.101        
cufflinks 0.222        
cufflinks 0.177        
cufflinks 0.044     Low Low
cufflinks 0.463        
cufflinks 1.057        
cufflinks 0.318        
cufflinks 1.421        

0 Strain