Gene : Medtr8g068300 M. truncatula Mt4.0v1
Defline:  (1 of 5) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Description:  1-deoxy-D-xylulose-5-phosphate synthase
Genomic Order:  3411 Name:  ? Medtr8g068300
Secondary Identifier:  ? PAC:31072422
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7560 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g068300 0.5kb upstream 0.5kb upstream 5002   true chr8: 28474111-28479112 Medicago truncatula
Medtr8g068300 0.5kb upstream 0.5kb upstream 500   false chr8: 28474111-28474610 Medicago truncatula
Medtr8g068300 0.5kb downstream 0.5kb downstream 5002   true chr8: 28474611-28479612 Medicago truncatula
Medtr8g068300 0.5kb downstream 0.5kb downstream 500   false chr8: 28479113-28479612 Medicago truncatula
Medtr8g068300 1.0kb upstream 1.0kb upstream 5502   true chr8: 28473611-28479112 Medicago truncatula
Medtr8g068300 1.0kb upstream 1.0kb upstream 1000   false chr8: 28473611-28474610 Medicago truncatula
Medtr8g068300 1.0kb downstream 1.0kb downstream 5502   true chr8: 28474611-28480112 Medicago truncatula
Medtr8g068300 1.0kb downstream 1.0kb downstream 1000   false chr8: 28479113-28480112 Medicago truncatula
Medtr8g068300 2.0kb upstream 2.0kb upstream 6502   true chr8: 28472611-28479112 Medicago truncatula
Medtr8g068300 2.0kb upstream 2.0kb upstream 2000   false chr8: 28472611-28474610 Medicago truncatula
Medtr8g068300 2.0kb downstream 2.0kb downstream 6502   true chr8: 28474611-28481112 Medicago truncatula
Medtr8g068300 2.0kb downstream 2.0kb downstream 2000   false chr8: 28479113-28481112 Medicago truncatula
Medtr8g068300 5.0kb upstream 5.0kb upstream 9502   true chr8: 28469611-28479112 Medicago truncatula
Medtr8g068300 5.0kb upstream 5.0kb upstream 5000   false chr8: 28469611-28474610 Medicago truncatula
Medtr8g068300 5.0kb downstream 5.0kb downstream 9502   true chr8: 28474611-28484112 Medicago truncatula
Medtr8g068300 5.0kb downstream 5.0kb downstream 5000   false chr8: 28479113-28484112 Medicago truncatula
Medtr8g068300 10.0kb upstream 10.0kb upstream 14502   true chr8: 28464611-28479112 Medicago truncatula
Medtr8g068300 10.0kb upstream 10.0kb upstream 10000   false chr8: 28464611-28474610 Medicago truncatula
Medtr8g068300 10.0kb downstream 10.0kb downstream 14502   true chr8: 28474611-28489112 Medicago truncatula
Medtr8g068300 10.0kb downstream 10.0kb downstream 10000   false chr8: 28479113-28489112 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301533 5265 Fabidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.094       High
cufflinks 0.039     Low  
cufflinks 0.087       High
cufflinks 0.016     Low Low
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low  
cufflinks 0.06     Low  
cufflinks 0.047     Low  

0 Strain