Gene : Medtr8g056780 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR34971:SF2 - PHOTOSYSTEM II REACTION CENTER PROTEIN Z Description:  photosystem II reaction center protein Z
Genomic Order:  2406 Name:  ? Medtr8g056780
Secondary Identifier:  ? PAC:31074729
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g056780 0.5kb upstream 0.5kb upstream 773   true chr8: 18971618-18972390 Medicago truncatula
Medtr8g056780 0.5kb upstream 0.5kb upstream 500   false chr8: 18971618-18972117 Medicago truncatula
Medtr8g056780 0.5kb downstream 0.5kb downstream 773   true chr8: 18972118-18972890 Medicago truncatula
Medtr8g056780 0.5kb downstream 0.5kb downstream 500   false chr8: 18972391-18972890 Medicago truncatula
Medtr8g056780 1.0kb upstream 1.0kb upstream 1273   true chr8: 18971118-18972390 Medicago truncatula
Medtr8g056780 1.0kb upstream 1.0kb upstream 1000   false chr8: 18971118-18972117 Medicago truncatula
Medtr8g056780 1.0kb downstream 1.0kb downstream 1273   true chr8: 18972118-18973390 Medicago truncatula
Medtr8g056780 1.0kb downstream 1.0kb downstream 1000   false chr8: 18972391-18973390 Medicago truncatula
Medtr8g056780 2.0kb upstream 2.0kb upstream 2273   true chr8: 18970118-18972390 Medicago truncatula
Medtr8g056780 2.0kb upstream 2.0kb upstream 2000   false chr8: 18970118-18972117 Medicago truncatula
Medtr8g056780 2.0kb downstream 2.0kb downstream 2273   true chr8: 18972118-18974390 Medicago truncatula
Medtr8g056780 2.0kb downstream 2.0kb downstream 2000   false chr8: 18972391-18974390 Medicago truncatula
Medtr8g056780 5.0kb upstream 5.0kb upstream 5273   true chr8: 18967118-18972390 Medicago truncatula
Medtr8g056780 5.0kb upstream 5.0kb upstream 5000   false chr8: 18967118-18972117 Medicago truncatula
Medtr8g056780 5.0kb downstream 5.0kb downstream 5273   true chr8: 18972118-18977390 Medicago truncatula
Medtr8g056780 5.0kb downstream 5.0kb downstream 5000   false chr8: 18972391-18977390 Medicago truncatula
Medtr8g056780 10.0kb upstream 10.0kb upstream 10273   true chr8: 18962118-18972390 Medicago truncatula
Medtr8g056780 10.0kb upstream 10.0kb upstream 10000   false chr8: 18962118-18972117 Medicago truncatula
Medtr8g056780 10.0kb downstream 10.0kb downstream 10273   true chr8: 18972118-18982390 Medicago truncatula
Medtr8g056780 10.0kb downstream 10.0kb downstream 10000   false chr8: 18972391-18982390 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028507 5273 Angiosperm View MSA
122313261 5265 Fabidae View MSA
124050197 5270 Rosid View MSA
123752030 5271 Pentapetalae View MSA
122774318 5272 Eudicot View MSA
121349923 5274 Embryophyte View MSA
123381503 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.364       Low
cufflinks 19.652     High  
cufflinks 26.133     High  
cufflinks 0.177       Low
cufflinks 18.251     High  
cufflinks 3.137        
cufflinks 0.317       Low
cufflinks 24.711     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain