Gene : Medtr8g061350 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR33398:SF2 - 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC Description:  30S ribosomal protein S20
Genomic Order:  2579 Name:  ? Medtr8g061350
Secondary Identifier:  ? PAC:31075695
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g061350 0.5kb upstream 0.5kb upstream 2392   true chr8: 21120046-21122437 Medicago truncatula
Medtr8g061350 0.5kb upstream 0.5kb upstream 500   false chr8: 21120046-21120545 Medicago truncatula
Medtr8g061350 0.5kb downstream 0.5kb downstream 2392   true chr8: 21120546-21122937 Medicago truncatula
Medtr8g061350 0.5kb downstream 0.5kb downstream 500   false chr8: 21122438-21122937 Medicago truncatula
Medtr8g061350 1.0kb upstream 1.0kb upstream 2892   true chr8: 21119546-21122437 Medicago truncatula
Medtr8g061350 1.0kb upstream 1.0kb upstream 1000   false chr8: 21119546-21120545 Medicago truncatula
Medtr8g061350 1.0kb downstream 1.0kb downstream 2892   true chr8: 21120546-21123437 Medicago truncatula
Medtr8g061350 1.0kb downstream 1.0kb downstream 1000   false chr8: 21122438-21123437 Medicago truncatula
Medtr8g061350 2.0kb upstream 2.0kb upstream 3892   true chr8: 21118546-21122437 Medicago truncatula
Medtr8g061350 2.0kb upstream 2.0kb upstream 2000   false chr8: 21118546-21120545 Medicago truncatula
Medtr8g061350 2.0kb downstream 2.0kb downstream 3892   true chr8: 21120546-21124437 Medicago truncatula
Medtr8g061350 2.0kb downstream 2.0kb downstream 2000   false chr8: 21122438-21124437 Medicago truncatula
Medtr8g061350 5.0kb upstream 5.0kb upstream 6892   true chr8: 21115546-21122437 Medicago truncatula
Medtr8g061350 5.0kb upstream 5.0kb upstream 5000   false chr8: 21115546-21120545 Medicago truncatula
Medtr8g061350 5.0kb downstream 5.0kb downstream 6892   true chr8: 21120546-21127437 Medicago truncatula
Medtr8g061350 5.0kb downstream 5.0kb downstream 5000   false chr8: 21122438-21127437 Medicago truncatula
Medtr8g061350 10.0kb upstream 10.0kb upstream 11892   true chr8: 21110546-21122437 Medicago truncatula
Medtr8g061350 10.0kb upstream 10.0kb upstream 10000   false chr8: 21110546-21120545 Medicago truncatula
Medtr8g061350 10.0kb downstream 10.0kb downstream 11892   true chr8: 21120546-21132437 Medicago truncatula
Medtr8g061350 10.0kb downstream 10.0kb downstream 10000   false chr8: 21122438-21132437 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027102 5273 Angiosperm View MSA
122306979 5265 Fabidae View MSA
124065268 5270 Rosid View MSA
123738976 5271 Pentapetalae View MSA
122785943 5272 Eudicot View MSA
121345926 5274 Embryophyte View MSA
123425445 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.762       Low
cufflinks 121.153     High  
cufflinks 127.99     High High
cufflinks 19.037     High  
cufflinks 124.557     High High
cufflinks 17.666     High  
cufflinks 6.638       Low
cufflinks 127.877     High High
cufflinks 6.706       Low

0 Strain