Gene : Medtr8g065040 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR24015:SF705 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  PPR containing plant-like protein
Genomic Order:  3256 Name:  ? Medtr8g065040
Secondary Identifier:  ? PAC:31074872
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g065040 0.5kb upstream 0.5kb upstream 2474   true chr8: 27314321-27316794 Medicago truncatula
Medtr8g065040 0.5kb upstream 0.5kb upstream 500   false chr8: 27316295-27316794 Medicago truncatula
Medtr8g065040 0.5kb downstream 0.5kb downstream 2474   true chr8: 27313821-27316294 Medicago truncatula
Medtr8g065040 0.5kb downstream 0.5kb downstream 500   false chr8: 27313821-27314320 Medicago truncatula
Medtr8g065040 1.0kb upstream 1.0kb upstream 2974   true chr8: 27314321-27317294 Medicago truncatula
Medtr8g065040 1.0kb upstream 1.0kb upstream 1000   false chr8: 27316295-27317294 Medicago truncatula
Medtr8g065040 1.0kb downstream 1.0kb downstream 2974   true chr8: 27313321-27316294 Medicago truncatula
Medtr8g065040 1.0kb downstream 1.0kb downstream 1000   false chr8: 27313321-27314320 Medicago truncatula
Medtr8g065040 2.0kb upstream 2.0kb upstream 3974   true chr8: 27314321-27318294 Medicago truncatula
Medtr8g065040 2.0kb upstream 2.0kb upstream 2000   false chr8: 27316295-27318294 Medicago truncatula
Medtr8g065040 2.0kb downstream 2.0kb downstream 3974   true chr8: 27312321-27316294 Medicago truncatula
Medtr8g065040 2.0kb downstream 2.0kb downstream 2000   false chr8: 27312321-27314320 Medicago truncatula
Medtr8g065040 5.0kb upstream 5.0kb upstream 6974   true chr8: 27314321-27321294 Medicago truncatula
Medtr8g065040 5.0kb upstream 5.0kb upstream 5000   false chr8: 27316295-27321294 Medicago truncatula
Medtr8g065040 5.0kb downstream 5.0kb downstream 6974   true chr8: 27309321-27316294 Medicago truncatula
Medtr8g065040 5.0kb downstream 5.0kb downstream 5000   false chr8: 27309321-27314320 Medicago truncatula
Medtr8g065040 10.0kb upstream 10.0kb upstream 11974   true chr8: 27314321-27326294 Medicago truncatula
Medtr8g065040 10.0kb upstream 10.0kb upstream 10000   false chr8: 27316295-27326294 Medicago truncatula
Medtr8g065040 10.0kb downstream 10.0kb downstream 11974   true chr8: 27304321-27316294 Medicago truncatula
Medtr8g065040 10.0kb downstream 10.0kb downstream 10000   false chr8: 27304321-27314320 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314395 5265 Fabidae View MSA
124037695 5270 Rosid View MSA
123743884 5271 Pentapetalae View MSA
122770801 5272 Eudicot View MSA
122048202 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310882 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.106        
cufflinks 0.048     Low  
cufflinks 0.057     Low  
cufflinks 0.012     Low Low
cufflinks 0.17       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.128        
cufflinks 0.076        
cufflinks 0.074     Low  

0 Strain