Gene : Medtr8g046560 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0687 - 26S proteasome regulatory complex, subunit RPN7/PSMD6 Description:  26S proteasome non-ATPase regulatory subunit 6
Genomic Order:  2373 Name:  ? Medtr8g046560
Secondary Identifier:  ? PAC:31070843
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7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ANAEROFRUCAT-PWY Medicago truncatula pathologic  
Mtruncatula ANAGLYCOLYSIS-PWY Medicago truncatula pathologic  
Mtruncatula GLUCONEO-PWY Medicago truncatula pathologic  
Mtruncatula PWY-1042 Medicago truncatula pathologic  
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY66-399 Medicago truncatula pathologic  
Mtruncatula SUCSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g046560 0.5kb upstream 0.5kb upstream 5258   true chr8: 18657985-18663242 Medicago truncatula
Medtr8g046560 0.5kb upstream 0.5kb upstream 500   false chr8: 18657985-18658484 Medicago truncatula
Medtr8g046560 0.5kb downstream 0.5kb downstream 5258   true chr8: 18658485-18663742 Medicago truncatula
Medtr8g046560 0.5kb downstream 0.5kb downstream 500   false chr8: 18663243-18663742 Medicago truncatula
Medtr8g046560 1.0kb upstream 1.0kb upstream 5758   true chr8: 18657485-18663242 Medicago truncatula
Medtr8g046560 1.0kb upstream 1.0kb upstream 1000   false chr8: 18657485-18658484 Medicago truncatula
Medtr8g046560 1.0kb downstream 1.0kb downstream 5758   true chr8: 18658485-18664242 Medicago truncatula
Medtr8g046560 1.0kb downstream 1.0kb downstream 1000   false chr8: 18663243-18664242 Medicago truncatula
Medtr8g046560 2.0kb upstream 2.0kb upstream 6758   true chr8: 18656485-18663242 Medicago truncatula
Medtr8g046560 2.0kb upstream 2.0kb upstream 2000   false chr8: 18656485-18658484 Medicago truncatula
Medtr8g046560 2.0kb downstream 2.0kb downstream 6758   true chr8: 18658485-18665242 Medicago truncatula
Medtr8g046560 2.0kb downstream 2.0kb downstream 2000   false chr8: 18663243-18665242 Medicago truncatula
Medtr8g046560 5.0kb upstream 5.0kb upstream 9758   true chr8: 18653485-18663242 Medicago truncatula
Medtr8g046560 5.0kb upstream 5.0kb upstream 5000   false chr8: 18653485-18658484 Medicago truncatula
Medtr8g046560 5.0kb downstream 5.0kb downstream 9758   true chr8: 18658485-18668242 Medicago truncatula
Medtr8g046560 5.0kb downstream 5.0kb downstream 5000   false chr8: 18663243-18668242 Medicago truncatula
Medtr8g046560 10.0kb upstream 10.0kb upstream 14758   true chr8: 18648485-18663242 Medicago truncatula
Medtr8g046560 10.0kb upstream 10.0kb upstream 10000   false chr8: 18648485-18658484 Medicago truncatula
Medtr8g046560 10.0kb downstream 10.0kb downstream 14758   true chr8: 18658485-18673242 Medicago truncatula
Medtr8g046560 10.0kb downstream 10.0kb downstream 10000   false chr8: 18663243-18673242 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122271945 5265 Fabidae View MSA
124041552 5270 Rosid View MSA
123757322 5271 Pentapetalae View MSA
122778384 5272 Eudicot View MSA
122052119 5273 Angiosperm View MSA
121312977 5274 Embryophyte View MSA
123350111 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.446        
cufflinks 1.663        
cufflinks 1.408        
cufflinks 2.492       High
cufflinks 1.786        
cufflinks 0.684       Low
cufflinks 1.313        
cufflinks 1.515        
cufflinks 2.419       High

0 Strain