Gene : Medtr8g054400 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23041:SF65 - E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  2475 Name:  ? Medtr8g054400
Secondary Identifier:  ? PAC:31074569
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g054400 0.5kb upstream 0.5kb upstream 4966   true chr8: 19768909-19773874 Medicago truncatula
Medtr8g054400 0.5kb upstream 0.5kb upstream 500   false chr8: 19773375-19773874 Medicago truncatula
Medtr8g054400 0.5kb downstream 0.5kb downstream 4966   true chr8: 19768409-19773374 Medicago truncatula
Medtr8g054400 0.5kb downstream 0.5kb downstream 500   false chr8: 19768409-19768908 Medicago truncatula
Medtr8g054400 1.0kb upstream 1.0kb upstream 5466   true chr8: 19768909-19774374 Medicago truncatula
Medtr8g054400 1.0kb upstream 1.0kb upstream 1000   false chr8: 19773375-19774374 Medicago truncatula
Medtr8g054400 1.0kb downstream 1.0kb downstream 5466   true chr8: 19767909-19773374 Medicago truncatula
Medtr8g054400 1.0kb downstream 1.0kb downstream 1000   false chr8: 19767909-19768908 Medicago truncatula
Medtr8g054400 2.0kb upstream 2.0kb upstream 6466   true chr8: 19768909-19775374 Medicago truncatula
Medtr8g054400 2.0kb upstream 2.0kb upstream 2000   false chr8: 19773375-19775374 Medicago truncatula
Medtr8g054400 2.0kb downstream 2.0kb downstream 6466   true chr8: 19766909-19773374 Medicago truncatula
Medtr8g054400 2.0kb downstream 2.0kb downstream 2000   false chr8: 19766909-19768908 Medicago truncatula
Medtr8g054400 5.0kb upstream 5.0kb upstream 9466   true chr8: 19768909-19778374 Medicago truncatula
Medtr8g054400 5.0kb upstream 5.0kb upstream 5000   false chr8: 19773375-19778374 Medicago truncatula
Medtr8g054400 5.0kb downstream 5.0kb downstream 9466   true chr8: 19763909-19773374 Medicago truncatula
Medtr8g054400 5.0kb downstream 5.0kb downstream 5000   false chr8: 19763909-19768908 Medicago truncatula
Medtr8g054400 10.0kb upstream 10.0kb upstream 14466   true chr8: 19768909-19783374 Medicago truncatula
Medtr8g054400 10.0kb upstream 10.0kb upstream 10000   false chr8: 19773375-19783374 Medicago truncatula
Medtr8g054400 10.0kb downstream 10.0kb downstream 14466   true chr8: 19758909-19773374 Medicago truncatula
Medtr8g054400 10.0kb downstream 10.0kb downstream 10000   false chr8: 19758909-19768908 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301235 5265 Fabidae View MSA
124065183 5270 Rosid View MSA
123752158 5271 Pentapetalae View MSA
122786923 5272 Eudicot View MSA
122042121 5273 Angiosperm View MSA
121345385 5274 Embryophyte View MSA
123428682 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.111       High
cufflinks 0.05     Low  
cufflinks 0.028     Low Low
cufflinks 0.073        
cufflinks 0.034     Low  
cufflinks 0.029     Low Low
cufflinks 0.07     Low  
cufflinks 0.03     Low  
cufflinks 0.107       High

0 Strain