Gene : Medtr8g096030 M. truncatula Mt4.0v1
Defline:  (1 of 492) PF01535 - PPR repeat (PPR) Description:  PPR containing plant-like protein
Genomic Order:  5028 Name:  ? Medtr8g096030
Secondary Identifier:  ? PAC:31074101
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g096030 0.5kb upstream 0.5kb upstream 2494   true chr8: 40055314-40057807 Medicago truncatula
Medtr8g096030 0.5kb upstream 0.5kb upstream 500   false chr8: 40057308-40057807 Medicago truncatula
Medtr8g096030 0.5kb downstream 0.5kb downstream 2494   true chr8: 40054814-40057307 Medicago truncatula
Medtr8g096030 0.5kb downstream 0.5kb downstream 500   false chr8: 40054814-40055313 Medicago truncatula
Medtr8g096030 1.0kb upstream 1.0kb upstream 2994   true chr8: 40055314-40058307 Medicago truncatula
Medtr8g096030 1.0kb upstream 1.0kb upstream 1000   false chr8: 40057308-40058307 Medicago truncatula
Medtr8g096030 1.0kb downstream 1.0kb downstream 2994   true chr8: 40054314-40057307 Medicago truncatula
Medtr8g096030 1.0kb downstream 1.0kb downstream 1000   false chr8: 40054314-40055313 Medicago truncatula
Medtr8g096030 2.0kb upstream 2.0kb upstream 3994   true chr8: 40055314-40059307 Medicago truncatula
Medtr8g096030 2.0kb upstream 2.0kb upstream 2000   false chr8: 40057308-40059307 Medicago truncatula
Medtr8g096030 2.0kb downstream 2.0kb downstream 3994   true chr8: 40053314-40057307 Medicago truncatula
Medtr8g096030 2.0kb downstream 2.0kb downstream 2000   false chr8: 40053314-40055313 Medicago truncatula
Medtr8g096030 5.0kb upstream 5.0kb upstream 6994   true chr8: 40055314-40062307 Medicago truncatula
Medtr8g096030 5.0kb upstream 5.0kb upstream 5000   false chr8: 40057308-40062307 Medicago truncatula
Medtr8g096030 5.0kb downstream 5.0kb downstream 6994   true chr8: 40050314-40057307 Medicago truncatula
Medtr8g096030 5.0kb downstream 5.0kb downstream 5000   false chr8: 40050314-40055313 Medicago truncatula
Medtr8g096030 10.0kb upstream 10.0kb upstream 11994   true chr8: 40055314-40067307 Medicago truncatula
Medtr8g096030 10.0kb upstream 10.0kb upstream 10000   false chr8: 40057308-40067307 Medicago truncatula
Medtr8g096030 10.0kb downstream 10.0kb downstream 11994   true chr8: 40045314-40057307 Medicago truncatula
Medtr8g096030 10.0kb downstream 10.0kb downstream 10000   false chr8: 40045314-40055313 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303393 5265 Fabidae View MSA
124050196 5270 Rosid View MSA
123737959 5271 Pentapetalae View MSA
122788156 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.674        
cufflinks 0.16       Low
cufflinks 0.352        
cufflinks 0.296        
cufflinks 0.821       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.691        
cufflinks 0.325        
cufflinks 0.643        

0 Strain