Gene : Medtr8g088050 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR17204:SF18 - PRE-MRNA-PROCESSING FACTOR 39 Description:  Pre-mRNA-processing factor 39, putative
Genomic Order:  4510 Name:  ? Medtr8g088050
Secondary Identifier:  ? PAC:31074812
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g088050 0.5kb upstream 0.5kb upstream 11543   true chr8: 36446742-36458284 Medicago truncatula
Medtr8g088050 0.5kb upstream 0.5kb upstream 500   false chr8: 36446742-36447241 Medicago truncatula
Medtr8g088050 0.5kb downstream 0.5kb downstream 11543   true chr8: 36447242-36458784 Medicago truncatula
Medtr8g088050 0.5kb downstream 0.5kb downstream 500   false chr8: 36458285-36458784 Medicago truncatula
Medtr8g088050 1.0kb upstream 1.0kb upstream 12043   true chr8: 36446242-36458284 Medicago truncatula
Medtr8g088050 1.0kb upstream 1.0kb upstream 1000   false chr8: 36446242-36447241 Medicago truncatula
Medtr8g088050 1.0kb downstream 1.0kb downstream 12043   true chr8: 36447242-36459284 Medicago truncatula
Medtr8g088050 1.0kb downstream 1.0kb downstream 1000   false chr8: 36458285-36459284 Medicago truncatula
Medtr8g088050 2.0kb upstream 2.0kb upstream 13043   true chr8: 36445242-36458284 Medicago truncatula
Medtr8g088050 2.0kb upstream 2.0kb upstream 2000   false chr8: 36445242-36447241 Medicago truncatula
Medtr8g088050 2.0kb downstream 2.0kb downstream 13043   true chr8: 36447242-36460284 Medicago truncatula
Medtr8g088050 2.0kb downstream 2.0kb downstream 2000   false chr8: 36458285-36460284 Medicago truncatula
Medtr8g088050 5.0kb upstream 5.0kb upstream 16043   true chr8: 36442242-36458284 Medicago truncatula
Medtr8g088050 5.0kb upstream 5.0kb upstream 5000   false chr8: 36442242-36447241 Medicago truncatula
Medtr8g088050 5.0kb downstream 5.0kb downstream 16043   true chr8: 36447242-36463284 Medicago truncatula
Medtr8g088050 5.0kb downstream 5.0kb downstream 5000   false chr8: 36458285-36463284 Medicago truncatula
Medtr8g088050 10.0kb upstream 10.0kb upstream 21043   true chr8: 36437242-36458284 Medicago truncatula
Medtr8g088050 10.0kb upstream 10.0kb upstream 10000   false chr8: 36437242-36447241 Medicago truncatula
Medtr8g088050 10.0kb downstream 10.0kb downstream 21043   true chr8: 36447242-36468284 Medicago truncatula
Medtr8g088050 10.0kb downstream 10.0kb downstream 10000   false chr8: 36458285-36468284 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308744 5265 Fabidae View MSA
124069199 5270 Rosid View MSA
123753236 5271 Pentapetalae View MSA
122790404 5272 Eudicot View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.496        
cufflinks 0.359        
cufflinks 0.458        
cufflinks 0.071       Low
cufflinks 0.535       High
cufflinks 0.071     Low Low
cufflinks 0.154        
cufflinks 0.41        
cufflinks 0.093     Low  

0 Strain