Gene : Medtr8g088110 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR33596:SF3 - COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED Description:  cold acclimation protein WCOR413
Genomic Order:  4514 Name:  ? Medtr8g088110
Secondary Identifier:  ? PAC:31075175
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g088110 0.5kb upstream 0.5kb upstream 3156   true chr8: 36484237-36487392 Medicago truncatula
Medtr8g088110 0.5kb upstream 0.5kb upstream 500   false chr8: 36484237-36484736 Medicago truncatula
Medtr8g088110 0.5kb downstream 0.5kb downstream 3156   true chr8: 36484737-36487892 Medicago truncatula
Medtr8g088110 0.5kb downstream 0.5kb downstream 500   false chr8: 36487393-36487892 Medicago truncatula
Medtr8g088110 1.0kb upstream 1.0kb upstream 3656   true chr8: 36483737-36487392 Medicago truncatula
Medtr8g088110 1.0kb upstream 1.0kb upstream 1000   false chr8: 36483737-36484736 Medicago truncatula
Medtr8g088110 1.0kb downstream 1.0kb downstream 3656   true chr8: 36484737-36488392 Medicago truncatula
Medtr8g088110 1.0kb downstream 1.0kb downstream 1000   false chr8: 36487393-36488392 Medicago truncatula
Medtr8g088110 2.0kb upstream 2.0kb upstream 4656   true chr8: 36482737-36487392 Medicago truncatula
Medtr8g088110 2.0kb upstream 2.0kb upstream 2000   false chr8: 36482737-36484736 Medicago truncatula
Medtr8g088110 2.0kb downstream 2.0kb downstream 4656   true chr8: 36484737-36489392 Medicago truncatula
Medtr8g088110 2.0kb downstream 2.0kb downstream 2000   false chr8: 36487393-36489392 Medicago truncatula
Medtr8g088110 5.0kb upstream 5.0kb upstream 7656   true chr8: 36479737-36487392 Medicago truncatula
Medtr8g088110 5.0kb upstream 5.0kb upstream 5000   false chr8: 36479737-36484736 Medicago truncatula
Medtr8g088110 5.0kb downstream 5.0kb downstream 7656   true chr8: 36484737-36492392 Medicago truncatula
Medtr8g088110 5.0kb downstream 5.0kb downstream 5000   false chr8: 36487393-36492392 Medicago truncatula
Medtr8g088110 10.0kb upstream 10.0kb upstream 12656   true chr8: 36474737-36487392 Medicago truncatula
Medtr8g088110 10.0kb upstream 10.0kb upstream 10000   false chr8: 36474737-36484736 Medicago truncatula
Medtr8g088110 10.0kb downstream 10.0kb downstream 12656   true chr8: 36484737-36497392 Medicago truncatula
Medtr8g088110 10.0kb downstream 10.0kb downstream 10000   false chr8: 36487393-36497392 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026496 5273 Angiosperm View MSA
122303130 5265 Fabidae View MSA
124068573 5270 Rosid View MSA
123739751 5271 Pentapetalae View MSA
122786208 5272 Eudicot View MSA
121350668 5274 Embryophyte View MSA
123381843 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.51        
cufflinks 25.75     High High
cufflinks 11.365     High  
cufflinks 1.272        
cufflinks 27.033     High High
cufflinks 0.396       Low
cufflinks 0.941        
cufflinks 11.502     High  
cufflinks 2.234        

0 Strain