Gene : Medtr8g087980 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  4506 Name:  ? Medtr8g087980
Secondary Identifier:  ? PAC:31074230
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g087980 0.5kb upstream 0.5kb upstream 2104   true chr8: 36411351-36413454 Medicago truncatula
Medtr8g087980 0.5kb upstream 0.5kb upstream 500   false chr8: 36412955-36413454 Medicago truncatula
Medtr8g087980 0.5kb downstream 0.5kb downstream 2104   true chr8: 36410851-36412954 Medicago truncatula
Medtr8g087980 0.5kb downstream 0.5kb downstream 500   false chr8: 36410851-36411350 Medicago truncatula
Medtr8g087980 1.0kb upstream 1.0kb upstream 2604   true chr8: 36411351-36413954 Medicago truncatula
Medtr8g087980 1.0kb upstream 1.0kb upstream 1000   false chr8: 36412955-36413954 Medicago truncatula
Medtr8g087980 1.0kb downstream 1.0kb downstream 2604   true chr8: 36410351-36412954 Medicago truncatula
Medtr8g087980 1.0kb downstream 1.0kb downstream 1000   false chr8: 36410351-36411350 Medicago truncatula
Medtr8g087980 2.0kb upstream 2.0kb upstream 3604   true chr8: 36411351-36414954 Medicago truncatula
Medtr8g087980 2.0kb upstream 2.0kb upstream 2000   false chr8: 36412955-36414954 Medicago truncatula
Medtr8g087980 2.0kb downstream 2.0kb downstream 3604   true chr8: 36409351-36412954 Medicago truncatula
Medtr8g087980 2.0kb downstream 2.0kb downstream 2000   false chr8: 36409351-36411350 Medicago truncatula
Medtr8g087980 5.0kb upstream 5.0kb upstream 6604   true chr8: 36411351-36417954 Medicago truncatula
Medtr8g087980 5.0kb upstream 5.0kb upstream 5000   false chr8: 36412955-36417954 Medicago truncatula
Medtr8g087980 5.0kb downstream 5.0kb downstream 6604   true chr8: 36406351-36412954 Medicago truncatula
Medtr8g087980 5.0kb downstream 5.0kb downstream 5000   false chr8: 36406351-36411350 Medicago truncatula
Medtr8g087980 10.0kb upstream 10.0kb upstream 11604   true chr8: 36411351-36422954 Medicago truncatula
Medtr8g087980 10.0kb upstream 10.0kb upstream 10000   false chr8: 36412955-36422954 Medicago truncatula
Medtr8g087980 10.0kb downstream 10.0kb downstream 11604   true chr8: 36401351-36412954 Medicago truncatula
Medtr8g087980 10.0kb downstream 10.0kb downstream 10000   false chr8: 36401351-36411350 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
122308309 5265 Fabidae View MSA
124070759 5270 Rosid View MSA
123743197 5271 Pentapetalae View MSA
122770561 5272 Eudicot View MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.832        
cufflinks 0.33        
cufflinks 0.461        
cufflinks 0.191       Low
cufflinks 1.557       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.619        
cufflinks 0.533        
cufflinks 0.555        

0 Strain