Gene : Medtr8g089560 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Description:  RPM1-interacting protein 4 (RIN4) family protein
Genomic Order:  4622 Name:  ? Medtr8g089560
Secondary Identifier:  ? PAC:31075850
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g089560 0.5kb upstream 0.5kb upstream 1024   true chr8: 37224322-37225345 Medicago truncatula
Medtr8g089560 0.5kb upstream 0.5kb upstream 500   false chr8: 37224322-37224821 Medicago truncatula
Medtr8g089560 0.5kb downstream 0.5kb downstream 1024   true chr8: 37224822-37225845 Medicago truncatula
Medtr8g089560 0.5kb downstream 0.5kb downstream 500   false chr8: 37225346-37225845 Medicago truncatula
Medtr8g089560 1.0kb upstream 1.0kb upstream 1524   true chr8: 37223822-37225345 Medicago truncatula
Medtr8g089560 1.0kb upstream 1.0kb upstream 1000   false chr8: 37223822-37224821 Medicago truncatula
Medtr8g089560 1.0kb downstream 1.0kb downstream 1524   true chr8: 37224822-37226345 Medicago truncatula
Medtr8g089560 1.0kb downstream 1.0kb downstream 1000   false chr8: 37225346-37226345 Medicago truncatula
Medtr8g089560 2.0kb upstream 2.0kb upstream 2524   true chr8: 37222822-37225345 Medicago truncatula
Medtr8g089560 2.0kb upstream 2.0kb upstream 2000   false chr8: 37222822-37224821 Medicago truncatula
Medtr8g089560 2.0kb downstream 2.0kb downstream 2524   true chr8: 37224822-37227345 Medicago truncatula
Medtr8g089560 2.0kb downstream 2.0kb downstream 2000   false chr8: 37225346-37227345 Medicago truncatula
Medtr8g089560 5.0kb upstream 5.0kb upstream 5524   true chr8: 37219822-37225345 Medicago truncatula
Medtr8g089560 5.0kb upstream 5.0kb upstream 5000   false chr8: 37219822-37224821 Medicago truncatula
Medtr8g089560 5.0kb downstream 5.0kb downstream 5524   true chr8: 37224822-37230345 Medicago truncatula
Medtr8g089560 5.0kb downstream 5.0kb downstream 5000   false chr8: 37225346-37230345 Medicago truncatula
Medtr8g089560 10.0kb upstream 10.0kb upstream 10524   true chr8: 37214822-37225345 Medicago truncatula
Medtr8g089560 10.0kb upstream 10.0kb upstream 10000   false chr8: 37214822-37224821 Medicago truncatula
Medtr8g089560 10.0kb downstream 10.0kb downstream 10524   true chr8: 37224822-37235345 Medicago truncatula
Medtr8g089560 10.0kb downstream 10.0kb downstream 10000   false chr8: 37225346-37235345 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298040 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.479     High Low
cufflinks 50.559     High  
cufflinks 62.516     High  
cufflinks 639.988     High High
cufflinks 47.52     High  
cufflinks 832.264     High High
cufflinks 433.361     High  
cufflinks 45.481     High  
cufflinks 397.558     High  

0 Strain