Gene : Medtr8g090105 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21027 - TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 Description:  tRNA-splicing endonuclease subunit sen54 amine-terminal protein
Genomic Order:  4697 Name:  ? Medtr8g090105
Secondary Identifier:  ? PAC:31072083
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g090105 0.5kb upstream 0.5kb upstream 3663   true chr8: 37738113-37741775 Medicago truncatula
Medtr8g090105 0.5kb upstream 0.5kb upstream 500   false chr8: 37741276-37741775 Medicago truncatula
Medtr8g090105 0.5kb downstream 0.5kb downstream 3663   true chr8: 37737613-37741275 Medicago truncatula
Medtr8g090105 0.5kb downstream 0.5kb downstream 500   false chr8: 37737613-37738112 Medicago truncatula
Medtr8g090105 1.0kb upstream 1.0kb upstream 4163   true chr8: 37738113-37742275 Medicago truncatula
Medtr8g090105 1.0kb upstream 1.0kb upstream 1000   false chr8: 37741276-37742275 Medicago truncatula
Medtr8g090105 1.0kb downstream 1.0kb downstream 4163   true chr8: 37737113-37741275 Medicago truncatula
Medtr8g090105 1.0kb downstream 1.0kb downstream 1000   false chr8: 37737113-37738112 Medicago truncatula
Medtr8g090105 2.0kb upstream 2.0kb upstream 5163   true chr8: 37738113-37743275 Medicago truncatula
Medtr8g090105 2.0kb upstream 2.0kb upstream 2000   false chr8: 37741276-37743275 Medicago truncatula
Medtr8g090105 2.0kb downstream 2.0kb downstream 5163   true chr8: 37736113-37741275 Medicago truncatula
Medtr8g090105 2.0kb downstream 2.0kb downstream 2000   false chr8: 37736113-37738112 Medicago truncatula
Medtr8g090105 5.0kb upstream 5.0kb upstream 8163   true chr8: 37738113-37746275 Medicago truncatula
Medtr8g090105 5.0kb upstream 5.0kb upstream 5000   false chr8: 37741276-37746275 Medicago truncatula
Medtr8g090105 5.0kb downstream 5.0kb downstream 8163   true chr8: 37733113-37741275 Medicago truncatula
Medtr8g090105 5.0kb downstream 5.0kb downstream 5000   false chr8: 37733113-37738112 Medicago truncatula
Medtr8g090105 10.0kb upstream 10.0kb upstream 13163   true chr8: 37738113-37751275 Medicago truncatula
Medtr8g090105 10.0kb upstream 10.0kb upstream 10000   false chr8: 37741276-37751275 Medicago truncatula
Medtr8g090105 10.0kb downstream 10.0kb downstream 13163   true chr8: 37728113-37741275 Medicago truncatula
Medtr8g090105 10.0kb downstream 10.0kb downstream 10000   false chr8: 37728113-37738112 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301544 5265 Fabidae View MSA
124066915 5270 Rosid View MSA
123737661 5271 Pentapetalae View MSA
122790630 5272 Eudicot View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.776        
cufflinks 0.674        
cufflinks 0.741        
cufflinks 0.596        
cufflinks 0.924       High
cufflinks 0.702        
cufflinks 0.61        
cufflinks 0.713        
cufflinks 0.282       Low

0 Strain