Gene : Medtr8g089980 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Description:  tRNA (cytosine(34)-C(5))-methyltransferase-like protein
Genomic Order:  4682 Name:  ? Medtr8g089980
Secondary Identifier:  ? PAC:31075411
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g089980 0.5kb upstream 0.5kb upstream 8316   true chr8: 37616052-37624367 Medicago truncatula
Medtr8g089980 0.5kb upstream 0.5kb upstream 500   false chr8: 37616052-37616551 Medicago truncatula
Medtr8g089980 0.5kb downstream 0.5kb downstream 8316   true chr8: 37616552-37624867 Medicago truncatula
Medtr8g089980 0.5kb downstream 0.5kb downstream 500   false chr8: 37624368-37624867 Medicago truncatula
Medtr8g089980 1.0kb upstream 1.0kb upstream 8816   true chr8: 37615552-37624367 Medicago truncatula
Medtr8g089980 1.0kb upstream 1.0kb upstream 1000   false chr8: 37615552-37616551 Medicago truncatula
Medtr8g089980 1.0kb downstream 1.0kb downstream 8816   true chr8: 37616552-37625367 Medicago truncatula
Medtr8g089980 1.0kb downstream 1.0kb downstream 1000   false chr8: 37624368-37625367 Medicago truncatula
Medtr8g089980 2.0kb upstream 2.0kb upstream 9816   true chr8: 37614552-37624367 Medicago truncatula
Medtr8g089980 2.0kb upstream 2.0kb upstream 2000   false chr8: 37614552-37616551 Medicago truncatula
Medtr8g089980 2.0kb downstream 2.0kb downstream 9816   true chr8: 37616552-37626367 Medicago truncatula
Medtr8g089980 2.0kb downstream 2.0kb downstream 2000   false chr8: 37624368-37626367 Medicago truncatula
Medtr8g089980 5.0kb upstream 5.0kb upstream 12816   true chr8: 37611552-37624367 Medicago truncatula
Medtr8g089980 5.0kb upstream 5.0kb upstream 5000   false chr8: 37611552-37616551 Medicago truncatula
Medtr8g089980 5.0kb downstream 5.0kb downstream 12816   true chr8: 37616552-37629367 Medicago truncatula
Medtr8g089980 5.0kb downstream 5.0kb downstream 5000   false chr8: 37624368-37629367 Medicago truncatula
Medtr8g089980 10.0kb upstream 10.0kb upstream 17816   true chr8: 37606552-37624367 Medicago truncatula
Medtr8g089980 10.0kb upstream 10.0kb upstream 10000   false chr8: 37606552-37616551 Medicago truncatula
Medtr8g089980 10.0kb downstream 10.0kb downstream 17816   true chr8: 37616552-37634367 Medicago truncatula
Medtr8g089980 10.0kb downstream 10.0kb downstream 10000   false chr8: 37624368-37634367 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301771 5265 Fabidae View MSA
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.758        
cufflinks 3.703        
cufflinks 2.943        
cufflinks 1.607       Low
cufflinks 7.006       High
cufflinks 1.213       Low
cufflinks 3.639        
cufflinks 3.823        
cufflinks 4.599        

0 Strain