Gene : Medtr8g079250 M. truncatula Mt4.0v1
Defline:  (1 of 7) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Description:  heavy metal P-type ATPase
Genomic Order:  4130 Name:  ? Medtr8g079250
Secondary Identifier:  ? PAC:31074582
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g079250 0.5kb upstream 0.5kb upstream 6469   true chr8: 33897475-33903943 Medicago truncatula
Medtr8g079250 0.5kb upstream 0.5kb upstream 500   false chr8: 33897475-33897974 Medicago truncatula
Medtr8g079250 0.5kb downstream 0.5kb downstream 6469   true chr8: 33897975-33904443 Medicago truncatula
Medtr8g079250 0.5kb downstream 0.5kb downstream 500   false chr8: 33903944-33904443 Medicago truncatula
Medtr8g079250 1.0kb upstream 1.0kb upstream 6969   true chr8: 33896975-33903943 Medicago truncatula
Medtr8g079250 1.0kb upstream 1.0kb upstream 1000   false chr8: 33896975-33897974 Medicago truncatula
Medtr8g079250 1.0kb downstream 1.0kb downstream 6969   true chr8: 33897975-33904943 Medicago truncatula
Medtr8g079250 1.0kb downstream 1.0kb downstream 1000   false chr8: 33903944-33904943 Medicago truncatula
Medtr8g079250 2.0kb upstream 2.0kb upstream 7969   true chr8: 33895975-33903943 Medicago truncatula
Medtr8g079250 2.0kb upstream 2.0kb upstream 2000   false chr8: 33895975-33897974 Medicago truncatula
Medtr8g079250 2.0kb downstream 2.0kb downstream 7969   true chr8: 33897975-33905943 Medicago truncatula
Medtr8g079250 2.0kb downstream 2.0kb downstream 2000   false chr8: 33903944-33905943 Medicago truncatula
Medtr8g079250 5.0kb upstream 5.0kb upstream 10969   true chr8: 33892975-33903943 Medicago truncatula
Medtr8g079250 5.0kb upstream 5.0kb upstream 5000   false chr8: 33892975-33897974 Medicago truncatula
Medtr8g079250 5.0kb downstream 5.0kb downstream 10969   true chr8: 33897975-33908943 Medicago truncatula
Medtr8g079250 5.0kb downstream 5.0kb downstream 5000   false chr8: 33903944-33908943 Medicago truncatula
Medtr8g079250 10.0kb upstream 10.0kb upstream 15969   true chr8: 33887975-33903943 Medicago truncatula
Medtr8g079250 10.0kb upstream 10.0kb upstream 10000   false chr8: 33887975-33897974 Medicago truncatula
Medtr8g079250 10.0kb downstream 10.0kb downstream 15969   true chr8: 33897975-33913943 Medicago truncatula
Medtr8g079250 10.0kb downstream 10.0kb downstream 10000   false chr8: 33903944-33913943 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121655826 5273 Angiosperm View MSA
122296469 5265 Fabidae View MSA
124035659 5270 Rosid View MSA
123609142 5271 Pentapetalae View MSA
122643792 5272 Eudicot View MSA
120927925 5274 Embryophyte View MSA
122968567 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low Low
cufflinks 0.04     Low  
cufflinks 0.032     Low  
cufflinks 0.048     Low  
cufflinks 0.051     Low  
cufflinks 0.043     Low  
cufflinks 0.091        
cufflinks 0.05     Low  
cufflinks 0.173       High

0 Strain