Gene : Medtr8g080230 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Description:  PLAT/LH2 domain lipoxygenase family protein
Genomic Order:  4211 Name:  ? Medtr8g080230
Secondary Identifier:  ? PAC:31075156
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5409 Medicago truncatula pathologic  
Mtruncatula PWY-5410 Medicago truncatula pathologic  
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g080230 0.5kb upstream 0.5kb upstream 7688   true chr8: 34466671-34474358 Medicago truncatula
Medtr8g080230 0.5kb upstream 0.5kb upstream 500   false chr8: 34473859-34474358 Medicago truncatula
Medtr8g080230 0.5kb downstream 0.5kb downstream 7688   true chr8: 34466171-34473858 Medicago truncatula
Medtr8g080230 0.5kb downstream 0.5kb downstream 500   false chr8: 34466171-34466670 Medicago truncatula
Medtr8g080230 1.0kb upstream 1.0kb upstream 8188   true chr8: 34466671-34474858 Medicago truncatula
Medtr8g080230 1.0kb upstream 1.0kb upstream 1000   false chr8: 34473859-34474858 Medicago truncatula
Medtr8g080230 1.0kb downstream 1.0kb downstream 8188   true chr8: 34465671-34473858 Medicago truncatula
Medtr8g080230 1.0kb downstream 1.0kb downstream 1000   false chr8: 34465671-34466670 Medicago truncatula
Medtr8g080230 2.0kb upstream 2.0kb upstream 9188   true chr8: 34466671-34475858 Medicago truncatula
Medtr8g080230 2.0kb upstream 2.0kb upstream 2000   false chr8: 34473859-34475858 Medicago truncatula
Medtr8g080230 2.0kb downstream 2.0kb downstream 9188   true chr8: 34464671-34473858 Medicago truncatula
Medtr8g080230 2.0kb downstream 2.0kb downstream 2000   false chr8: 34464671-34466670 Medicago truncatula
Medtr8g080230 5.0kb upstream 5.0kb upstream 12188   true chr8: 34466671-34478858 Medicago truncatula
Medtr8g080230 5.0kb upstream 5.0kb upstream 5000   false chr8: 34473859-34478858 Medicago truncatula
Medtr8g080230 5.0kb downstream 5.0kb downstream 12188   true chr8: 34461671-34473858 Medicago truncatula
Medtr8g080230 5.0kb downstream 5.0kb downstream 5000   false chr8: 34461671-34466670 Medicago truncatula
Medtr8g080230 10.0kb upstream 10.0kb upstream 17188   true chr8: 34466671-34483858 Medicago truncatula
Medtr8g080230 10.0kb upstream 10.0kb upstream 10000   false chr8: 34473859-34483858 Medicago truncatula
Medtr8g080230 10.0kb downstream 10.0kb downstream 17188   true chr8: 34456671-34473858 Medicago truncatula
Medtr8g080230 10.0kb downstream 10.0kb downstream 10000   false chr8: 34456671-34466670 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299758 5265 Fabidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.889        
cufflinks 42.079     High  
cufflinks 20.641     High  
cufflinks 0.006     Low Low
cufflinks 44.846     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.102        
cufflinks 27.108     High  
cufflinks 0.112        

0 Strain