Gene : Medtr8g080090 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10701 - SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N Description:  like-Sm protein
Genomic Order:  4200 Name:  ? Medtr8g080090
Secondary Identifier:  ? PAC:31073801
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g080090 0.5kb upstream 0.5kb upstream 1310   true chr8: 34399883-34401192 Medicago truncatula
Medtr8g080090 0.5kb upstream 0.5kb upstream 500   false chr8: 34399883-34400382 Medicago truncatula
Medtr8g080090 0.5kb downstream 0.5kb downstream 1310   true chr8: 34400383-34401692 Medicago truncatula
Medtr8g080090 0.5kb downstream 0.5kb downstream 500   false chr8: 34401193-34401692 Medicago truncatula
Medtr8g080090 1.0kb upstream 1.0kb upstream 1810   true chr8: 34399383-34401192 Medicago truncatula
Medtr8g080090 1.0kb upstream 1.0kb upstream 1000   false chr8: 34399383-34400382 Medicago truncatula
Medtr8g080090 1.0kb downstream 1.0kb downstream 1810   true chr8: 34400383-34402192 Medicago truncatula
Medtr8g080090 1.0kb downstream 1.0kb downstream 1000   false chr8: 34401193-34402192 Medicago truncatula
Medtr8g080090 2.0kb upstream 2.0kb upstream 2810   true chr8: 34398383-34401192 Medicago truncatula
Medtr8g080090 2.0kb upstream 2.0kb upstream 2000   false chr8: 34398383-34400382 Medicago truncatula
Medtr8g080090 2.0kb downstream 2.0kb downstream 2810   true chr8: 34400383-34403192 Medicago truncatula
Medtr8g080090 2.0kb downstream 2.0kb downstream 2000   false chr8: 34401193-34403192 Medicago truncatula
Medtr8g080090 5.0kb upstream 5.0kb upstream 5810   true chr8: 34395383-34401192 Medicago truncatula
Medtr8g080090 5.0kb upstream 5.0kb upstream 5000   false chr8: 34395383-34400382 Medicago truncatula
Medtr8g080090 5.0kb downstream 5.0kb downstream 5810   true chr8: 34400383-34406192 Medicago truncatula
Medtr8g080090 5.0kb downstream 5.0kb downstream 5000   false chr8: 34401193-34406192 Medicago truncatula
Medtr8g080090 10.0kb upstream 10.0kb upstream 10810   true chr8: 34390383-34401192 Medicago truncatula
Medtr8g080090 10.0kb upstream 10.0kb upstream 10000   false chr8: 34390383-34400382 Medicago truncatula
Medtr8g080090 10.0kb downstream 10.0kb downstream 10810   true chr8: 34400383-34411192 Medicago truncatula
Medtr8g080090 10.0kb downstream 10.0kb downstream 10000   false chr8: 34401193-34411192 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122269367 5265 Fabidae Singleton cluster - no MSA
124061345 5270 Rosid View MSA
123739342 5271 Pentapetalae View MSA
122791221 5272 Eudicot View MSA
122047301 5273 Angiosperm View MSA
121345396 5274 Embryophyte View MSA
123425185 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.302        
cufflinks 5.746        
cufflinks 6.403        
cufflinks 32.807     High High
cufflinks 7.696        
cufflinks 24.788     High High
cufflinks 7.871        
cufflinks 7.602        
cufflinks 14.648     High  

0 Strain